MD00G1027300.v1.1

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001467
Physical Location & Seq
Reverse (-)
4543106 .. 4544474
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1027300.v1.1.491

Sequence Viewer

Length: 360 bp
ATGTGGTCTTTCCTTTGTGTTTTGTTATCAAATGGCTTGGGTAAGGGACGTTGCCAAAAGCAGAATGGAGGATTTTTCGAGGAATTTGAGTCGTCGGCGGCTTTTGATGCCTTACGATCCCTGACGACGGCCACAGCTGTGGAGTACTCTCATACCCCGGCAATCTCTGACGACGTCGTTCCTGAAACTAAGGTCTGTTTGGAAGGTAAAGTTACTGTACGTAACGGAATAGTATGTTTGAGTCCTAAAGTTGTGACTCTGTTGGGAGGTGTTGTTCAATCACTTTACGAAGAATGGCAGATGAATACAAAATATTCCGAGTTTTCACGTTCAACCTTTAAGGATTTCACAGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

120

Amino Acids

13.12

Weight (kDa)

5.8

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 42 - 100 1.4e-10 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 2 cut(s) 146, 219
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 278, 333
AleI CACNNNNGTG 1 cut(s) 137
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 158
BceAI ACGGC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 158
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 127
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 156
BstSNI TACGTA 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 145, 218
CviJI RGCY 4 cut(s) 36, 101, 131, 137
CviKI_1 RGCY 4 cut(s) 36, 101, 131, 137
CviQI GTAC 2 cut(s) 145, 218
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 129
Eco105I TACGTA 1 cut(s) 221
FaiI YATR 2 cut(s) 153, 235
FaqI GGGAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 174
HinfI GANTC 3 cut(s) 89, 241, 256
HpaII CCGG 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 169, 319
Hpy188III TCNNGA 1 cut(s) 182
Hpy99I CGWCG 4 cut(s) 97, 130, 176, 179
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 4 cut(s) 49, 174, 220, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 4 cut(s) 49, 174, 220, 328
Hsp92I GRCGYC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 4 cut(s) 134, 171, 195, 336
LweI GCATC 1 cut(s) 97
MaeII ACGT 4 cut(s) 49, 174, 220, 328
MaeIII GTNAC 3 cut(s) 211, 221, 253
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 302
MluCI AATT 1 cut(s) 83
MlyI GAGTC 3 cut(s) 98, 250, 250
MnlI CCTC 3 cut(s) 62, 73, 260
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 3 cut(s) 97, 249, 250
PpsI GAGTC 3 cut(s) 97, 249, 250
Ppu21I YACGTR 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 146, 219
RsaNI GTAC 2 cut(s) 145, 218
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 3 cut(s) 98, 250, 250
ScrFI CCNGG 1 cut(s) 158
SetI ASST 9 cut(s) 52, 139, 177, 195, 208, 223, 271, 331, 338
SfaNI GCATC 1 cut(s) 97
SgeI CNNG 8 cut(s) 49, 91, 133, 169, 170, 194, 331, 339
SmiMI CAYNNNNRTG 1 cut(s) 137
SnaBI TACGTA 1 cut(s) 221
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 98
SspI AATATT 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 4 cut(s) 52, 177, 223, 331
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 173
XapI RAATTY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
ZraI GACGTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.