MD15G1234700.v1.1

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001467
Physical Location & Seq
Reverse (-)
19277622 .. 19282501
4880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1234700.v1.1.491

Sequence Viewer

Length: 252 bp
ATGATTGCTAAGAACTCTACTTCTGCAGCCATTATTGGGCCTTCTAGGACATTGTCTTCGGCGATGTATGTCGAGTCCAAGAGGGTGCGGGTGTGGACAGAGAGCAAACAGGTTATGGTGGCCACCGTGAAAAGAGGTTGGAAGACCTTGGTGTTAGGTTCCAAGAGCCATGAGCTTGCTGATGAGTGGTCCTGGCATGTCTCAGCAACCATCAATACAGAATACAACACCAAAAGATTTACAGGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

84

Amino Acids

9.32

Weight (kDa)

10.09

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 36
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 205
AoxI GGCC 2 cut(s) 38, 120
ApeKI GCWGC 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
AspS9I GGNCC 2 cut(s) 38, 189
AvaII GGWCC 1 cut(s) 189
BalI TGGCCA 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 48, 149
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 38, 189
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 193
BpiI GAAGAC 2 cut(s) 48, 149
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 38
BshFI GGCC 2 cut(s) 40, 122
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 205
BsnI GGCC 2 cut(s) 40, 122
BspACI CCGC 1 cut(s) 88
BspANI GGCC 2 cut(s) 40, 122
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 9, 202
BstMAI GTCTC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 2 cut(s) 48, 149
BsuRI GGCC 2 cut(s) 40, 122
BtgZI GCGATG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 38, 189
CviAII CATG 2 cut(s) 170, 197
CviJI RGCY 5 cut(s) 29, 40, 122, 168, 175
CviKI_1 RGCY 5 cut(s) 29, 40, 122, 168, 175
DdeI CTNAG 2 cut(s) 9, 202
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 173, 200
FaiI YATR 5 cut(s) 69, 116, 171, 198, 250
FatI CATG 2 cut(s) 169, 196
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 45
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 2 cut(s) 40, 122
Hin1II CATG 2 cut(s) 173, 200
HinfI GANTC 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 26
HpyF3I CTNAG 2 cut(s) 9, 202
Hsp92II CATG 2 cut(s) 173, 200
LpnPI CCDG 4 cut(s) 95, 178, 205, 228
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 1 cut(s) 45
MboII GAAGA 2 cut(s) 48, 154
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 2 cut(s) 75, 128
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
NlaIII CATG 2 cut(s) 173, 200
NlaIV GGNNCC 1 cut(s) 160
NspI RCATGY 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 38, 189
PstI CTGCAG 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 52
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 2 cut(s) 38, 189
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 193
SetI ASST 5 cut(s) 114, 139, 149, 160, 177
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 189
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 72
TseI GCWGC 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 189
XceI RCATGY 1 cut(s) 200
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.