Rh2BG468700

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001467
Physical Location & Seq
Reverse (-)
66183556 .. 66188188
4633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG468700.1

Sequence Viewer

Length: 234 bp
ATGTTAGTGCAGTGGCCAAGGCACAATGCAGGTGAGGTCATGAAATTTGAGTACCAAAAGAAGGTTGCCTCGCTGAGCAAGCTGAAGAAATGTAGTACTAACTCAGAAGCATTGGAGAAATCAAGAGCAGCAATGAGCGATTTCAACCAGGTACTTTTGGTTGATCAAGGCTTTGGTGGATATTTTAATGGGTCTGATGGTGAGTTCTGGGTAGTTGGTCGGGAGGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

8.85

Isoelectric Point (pI)

9.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
Acc36I ACCTGC 2 cut(s) 20, 219
AcoI YGGCCR 1 cut(s) 14
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 3 cut(s) 53, 97, 153
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 44, 212
BalI TGGCCA 1 cut(s) 16
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 163
BfuAI ACCTGC 2 cut(s) 20, 219
BisI GCNGC 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 65, 117
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 163
Bsp1720I GCTNAGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 66, 116
BspHI TCATGA 1 cut(s) 39
BspMI ACCTGC 2 cut(s) 20, 219
BsrDI GCAATG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 74, 103
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 17
BveI ACCTGC 2 cut(s) 20, 219
Cac8I GCNNGC 1 cut(s) 80
CciI TCATGA 1 cut(s) 39
CsiI ACCWGGT 1 cut(s) 147
Csp6I GTAC 3 cut(s) 52, 96, 152
CviAII CATG 1 cut(s) 40
CviJI RGCY 3 cut(s) 16, 82, 171
CviKI_1 RGCY 3 cut(s) 16, 82, 171
CviQI GTAC 3 cut(s) 52, 96, 152
DdeI CTNAG 2 cut(s) 74, 103
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FatI CATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 1 cut(s) 43
HphI GGTGA 2 cut(s) 44, 212
Hpy188I TCNGA 2 cut(s) 106, 196
Hpy188III TCNNGA 3 cut(s) 40, 123, 221
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 10, 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 74, 103
Hsp92II CATG 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 15, 134, 161, 193, 214
Lsp1109I GCAGC 1 cut(s) 140
MabI ACCWGGT 1 cut(s) 147
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 16
MluCI AATT 1 cut(s) 44
MluNI TGGCCA 1 cut(s) 16
MnlI CCTC 3 cut(s) 28, 79, 217
Mox20I TGGCCA 1 cut(s) 16
MscI TGGCCA 1 cut(s) 16
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 43
PagI TCATGA 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
RsaI GTAC 3 cut(s) 53, 97, 153
RsaNI GTAC 3 cut(s) 52, 96, 152
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 149
SetI ASST 6 cut(s) 34, 39, 66, 84, 153, 233
SexAI ACCWGGT 1 cut(s) 147
Sse9I AATT 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 17
TasI AATT 1 cut(s) 44
TatI WGTACW 1 cut(s) 95
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 17
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 1 cut(s) 17
XapI RAATTY 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.