MD00G1027200.v1.1

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001467
Physical Location & Seq
Reverse (-)
4526052 .. 4539413
13362 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1027200.v1.1.491

Sequence Viewer

Length: 171 bp
ATGGTTCTTCGCGACCACGAACAAGTGGAGGCGATTATCCTGATCCACTCCGCCTTGTCCGACGAGAAGCATACGGTGGTGAATCCAGTAGAAGCCGAGCTCACCAACATGGACCTCAATTCCATCTCCGCCAGGTTCTTGCCCAATGCTGAGCTTGTGTTATACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

57

Amino Acids

6.3

Weight (kDa)

4.62

Isoelectric Point (pI)

23.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 2 cut(s) 51, 129
AclWI GGATC 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 165
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 2 cut(s) 100, 154
AluI AGCT 2 cut(s) 100, 154
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 91, 94
AvaII GGWCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 133
BlpI GCTNAGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 42
Bsp1720I GCTNAGC 1 cut(s) 150
Bsp68I TCGCGA 1 cut(s) 12
BspACI CCGC 2 cut(s) 51, 129
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 12
BspPI GGATC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 86
BssMI GATC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 1 cut(s) 12
BtuMI TCGCGA 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 95, 100, 154
CviKI_1 RGCY 3 cut(s) 95, 100, 154
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EciI GGCGGA 2 cut(s) 40, 118
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 1 cut(s) 112
FaiI YATR 3 cut(s) 72, 110, 163
FatI CATG 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 82
HphI GGTGA 2 cut(s) 91, 94
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 11, 40
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 53, 99, 118, 145
MaeII ACGT 1 cut(s) 165
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 22, 125
MslI CAYNNNNRTG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 12
NdeII GATC 1 cut(s) 42
NlaIII CATG 1 cut(s) 112
NmeAIII GCCGAG 1 cut(s) 121
NruI TCGCGA 1 cut(s) 12
PfeI GAWTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspPI GGNCC 1 cut(s) 112
RruI TCGCGA 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 102
SetI ASST 5 cut(s) 102, 117, 137, 156, 168
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 1 cut(s) 118
SsiI CCGC 2 cut(s) 51, 129
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 168
TasI AATT 1 cut(s) 118
TfiI GAWTC 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.