pycom09g10760

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001467
Physical Location & Seq
Reverse (-)
8843115 .. 8843420
306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10760.3

Sequence Viewer

Length: 210 bp
ATGTGGTCTTTCATTTGCGGTTTTACGAGGAATACGAGTAGTCGGCGGCTTTTGAAACTCGGGCTCACAGACAACCACGGTGAGGTAGCAGCTGTGGAGTACTCTCATATCCCGGCAATCCCTGACGACGTCGTTCCTGGAACTAAAGTATTCTCTGTTTTAGGTCACGACTTACAGTTTATGGCTCCAAACTGTTTGTCACGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

70

Amino Acids

7.63

Weight (kDa)

6.81

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AciI CCGC 2 cut(s) 18, 46
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 89
ArsI GACNNNNNNTTYG 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 59
BanII GRGCYC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 113
BisI GCNGC 2 cut(s) 47, 90
BlsI GCNGC 2 cut(s) 48, 91
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 113, 138
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 113, 138
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 66
BspACI CCGC 2 cut(s) 18, 46
BspLI GGNNCC 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 80, 177, 194
BstACI GRCGYC 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 76
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 111, 136
BstV1I GCAGC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 76
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 4 cut(s) 49, 64, 92, 185
CviKI_1 RGCY 4 cut(s) 49, 64, 92, 185
CviQI GTAC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 66
FaiI YATR 2 cut(s) 108, 182
Fnu4HI GCNGC 2 cut(s) 47, 90
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 47, 90
GluI GCNGC 2 cut(s) 47, 90
HapII CCGG 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 129
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 167, 201
Hpy99I CGWCG 2 cut(s) 131, 134
HpyCH4III ACNGT 3 cut(s) 80, 177, 194
HpyCH4IV ACGT 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 123, 126, 135, 150
Lsp1109I GCAGC 1 cut(s) 101
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 164, 198
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 205
MnlI CCTC 2 cut(s) 21, 76
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 113, 138
MvaI CCWGG 1 cut(s) 138
NciI CCSGG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 164, 198
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PflFI GACNNNGTC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 48, 91
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 186
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SatI GCNGC 2 cut(s) 47, 90
ScaI AGTACT 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 113, 138
SduI GDGCHC 1 cut(s) 66
SetI ASST 4 cut(s) 87, 94, 132, 166
Sse9I AATT 1 cut(s) 205
SsiI CCGC 2 cut(s) 18, 46
StyD4I CCNGG 2 cut(s) 111, 136
TaaI ACNGT 3 cut(s) 80, 177, 194
TaiI ACGT 1 cut(s) 132
TasI AATT 1 cut(s) 205
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 49
TseFI GTSAC 2 cut(s) 164, 198
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 2 cut(s) 164, 198
Tth111I GACNNNGTC 1 cut(s) 128
ZraI GACGTC 1 cut(s) 130
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.