Rmu_sc0000243.1_g000024

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000243.1
OG0001467
Physical Location & Seq
Reverse (-)
92331 .. 95635
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000243.1_g000024.1.cds

Sequence Viewer

Length: 1080 bp
atggcgaagcaatctaaagccaagaaatcggagaatttgggaaagtgtaccgtcaccccgtccagatcgccttcctcgtcagccagtttctctttgataacagctataccgaagcctgctttgttttctgaactgaagcctcctcactcttctctacgtctccgattcaagagattgatttcttcacataataaacacccaatggaaaccaaggccacccagagttcatcagttgcttcttctacgacgtcgtttgggagctcgaagaagacggtgtgggtttggacggagagcaagcaggtcatgacggccgccgtggagagaggctggaacaccttcctgtttcagcgtcagaaactcgccgatgactggtcttatcctcttttgatcaaagacggagggattttcgatagtgagaacacgagagttgccacagttgttgacgtttccaatcccaaagagttggaagagcttcaacccgaaaacggggtggctgagaatgttgttgttgatttgctggattggcagggtaaagttcctgaaattttcaggtctctacaagtttacggatgtttcttggttgttcctattttggttttgctcagttcggagttcgtctccgttctggtcttgccccattttctgtgtttccgatttcacacttcccgattcaatggtttccctccttttcatctccctctgttctgcttggtttggttcatcggttcttcagagccactctctaagtgggattttctcactattgcacggggtgatgcaacaagattctgtgtaccttcgggtgcctatctcttcgatttcaccttcattcggtttttccggacttctttcatctggtttatccagttgttgtgtctttggttcttttggcagacgaggttcttgatgcagatgagggttctggtgatttctggaggtttgaaggctggtttcatggaatttggcataggtcttgctcgacccattgtcctgaaatgctcctgtcgctatttgcttcacgttgggttcgattttggggggttttccattatgctgaaaaggggattgagttgggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

359

Amino Acids

40.74

Weight (kDa)

9.56

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 289
AccB1I GGYRCC 1 cut(s) 803
AccIII TCCGGA 1 cut(s) 840
AciI CCGC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 3 cut(s) 34, 543, 959
AcuI CTGAAG 2 cut(s) 155, 714
AcyI GRCGYC 1 cut(s) 248
AdeI CACNNNGTG 1 cut(s) 773
AfaI GTAC 2 cut(s) 49, 795
AfiI CCNNNNNNNGG 4 cut(s) 369, 485, 486, 831
AgsI TTSAA 4 cut(s) 169, 476, 673, 943
AhdI GACNNNNNGTC 1 cut(s) 986
AluBI AGCT 3 cut(s) 104, 261, 472
AluI AGCT 3 cut(s) 104, 261, 472
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 3 cut(s) 164, 558, 622
Aor13HI TCCGGA 1 cut(s) 840
AoxI GGCC 2 cut(s) 213, 309
ApoI RAATTY 3 cut(s) 34, 543, 959
Asp700I GAANNNNTTC 2 cut(s) 335, 471
AsuHPI GGTGA 4 cut(s) 46, 785, 814, 937
BanI GGYRCC 1 cut(s) 803
BanII GRGCYC 1 cut(s) 263
BauI CACGAG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 263
BceAI ACGGC 2 cut(s) 299, 324
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 164, 558, 622
BfuAI ACCTGC 1 cut(s) 289
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmeRI GACNNNNNGTC 1 cut(s) 986
BmiI GGNNCC 1 cut(s) 805
BmsI GCATC 2 cut(s) 766, 897
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 4 cut(s) 602, 634, 725, 757
BpmI CTGGAG 1 cut(s) 954
BsaHI GRCGYC 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 210, 315
BsaWI WCCGGW 1 cut(s) 840
Bsc4I CCNNNNNNNGG 4 cut(s) 369, 485, 486, 831
Bse1I ACTGG 3 cut(s) 84, 374, 865
BseAI TCCGGA 1 cut(s) 840
BseDI CCNNGG 2 cut(s) 210, 315
BseGI GGATG 1 cut(s) 575
BseLI CCNNNNNNNGG 4 cut(s) 369, 485, 486, 831
BseMII CTCAG 2 cut(s) 486, 616
BseNI ACTGG 3 cut(s) 84, 374, 865
BseRI GAGGAG 1 cut(s) 132
BseX3I CGGCCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 215, 311
BshNI GGYRCC 1 cut(s) 803
BsiEI CGRYCG 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 841
BslI CCNNNNNNNGG 4 cut(s) 369, 485, 486, 831
BsmAI GTCTC 3 cut(s) 164, 558, 622
BsmBI CGTCTC 2 cut(s) 164, 622
BsnI GGCC 2 cut(s) 215, 311
Bso31I GGTCTC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 263
Bsp13I TCCGGA 1 cut(s) 840
Bsp143I GATC 2 cut(s) 65, 387
BspACI CCGC 1 cut(s) 312
BspANI GGCC 2 cut(s) 215, 311
BspCNI CTCAG 2 cut(s) 487, 615
BspEI TCCGGA 1 cut(s) 840
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 805
BspMI ACCTGC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 558
BsrI ACTGG 3 cut(s) 84, 374, 865
BssECI CCNNGG 2 cut(s) 210, 315
BssMI GATC 2 cut(s) 65, 387
BssNI GRCGYC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 421
Bst4CI ACNGT 3 cut(s) 52, 274, 436
Bst6I CTCTTC 3 cut(s) 154, 462, 818
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 117, 296
BstDEI CTNAG 3 cut(s) 495, 602, 744
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 575
BstKTI GATC 2 cut(s) 68, 390
BstMAI GTCTC 3 cut(s) 164, 558, 622
BstMBI GATC 2 cut(s) 65, 387
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 523, 1005
BstV2I GAAGAC 1 cut(s) 275
BstXI CCANNNNNNTGG 1 cut(s) 463
BstZI CGGCCG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 215, 311
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 575
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 117, 296
CciI TCATGA 1 cut(s) 303
CseI GACGC 1 cut(s) 338
Csp6I GTAC 2 cut(s) 48, 794
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 2 cut(s) 304, 955
CviQI GTAC 2 cut(s) 48, 794
DdeI CTNAG 3 cut(s) 495, 602, 744
DpnI GATC 2 cut(s) 67, 389
DpnII GATC 2 cut(s) 65, 387
DraIII CACNNNGTG 1 cut(s) 773
DriI GACNNNNNGTC 1 cut(s) 986
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 3 cut(s) 154, 462, 818
Eam1105I GACNNNNNGTC 1 cut(s) 986
EarI CTCTTC 3 cut(s) 154, 462, 818
Ecl136II GAGCTC 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 558
Eco52I CGGCCG 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 2 cut(s) 155, 714
EcoICRI GAGCTC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 2 cut(s) 164, 622
FaeI CATG 2 cut(s) 307, 958
FaiI YATR 6 cut(s) 107, 189, 305, 956, 968, 1052
FatI CATG 2 cut(s) 303, 954
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 582
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 954
HaeIII GGCC 2 cut(s) 215, 311
HapII CCGG 1 cut(s) 841
HgaI GACGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 2 cut(s) 307, 958
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 3 cut(s) 165, 669, 786
HpaII CCGG 1 cut(s) 841
HphI GGTGA 4 cut(s) 46, 785, 814, 937
Hpy166II GTNNAC 4 cut(s) 48, 442, 565, 794
Hpy188I TCNGA 7 cut(s) 31, 130, 164, 354, 610, 653, 733
Hpy188III TCNNGA 9 cut(s) 63, 169, 304, 539, 666, 841, 904, 933, 991
Hpy8I GTNNAC 4 cut(s) 48, 442, 565, 794
Hpy99I CGWCG 2 cut(s) 250, 253
HpyAV CCTTC 5 cut(s) 81, 346, 807, 835, 937
HpyCH4III ACNGT 3 cut(s) 52, 274, 436
HpyCH4IV ACGT 4 cut(s) 157, 248, 444, 1020
HpyCH4V TGCA 3 cut(s) 767, 779, 910
HpyF10VI GCNNNNNNNGC 2 cut(s) 523, 1005
HpyF3I CTNAG 3 cut(s) 495, 602, 744
HpySE526I ACGT 4 cut(s) 157, 248, 444, 1020
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 2 cut(s) 307, 958
Kpn2I TCCGGA 1 cut(s) 840
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 2 cut(s) 65, 387
LguI GCTCTTC 1 cut(s) 462
LmnI GCTCC 2 cut(s) 258, 1004
LweI GCATC 2 cut(s) 766, 897
MaeII ACGT 4 cut(s) 157, 248, 444, 1020
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 67, 389
MboI GATC 2 cut(s) 65, 387
MboII GAAGA 8 cut(s) 141, 174, 231, 277, 280, 479, 720, 805
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 3 cut(s) 34, 543, 959
MmeI TCCRAC 1 cut(s) 444
MroI TCCGGA 1 cut(s) 840
MroXI GAANNNNTTC 2 cut(s) 335, 471
MspI CCGG 1 cut(s) 841
MwoI GCNNNNNNNGC 2 cut(s) 523, 1005
NdeII GATC 2 cut(s) 65, 387
NlaIII CATG 2 cut(s) 307, 958
NlaIV GGNNCC 1 cut(s) 805
NmuCI GTSAC 1 cut(s) 52
PagI TCATGA 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 462
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 1026
PdmI GAANNNNTTC 2 cut(s) 335, 471
PfeI GAWTC 3 cut(s) 165, 669, 786
PkrI GCNGC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 805
RsaI GTAC 2 cut(s) 49, 795
RsaNI GTAC 2 cut(s) 48, 794
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 462
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 65, 387
SduI GDGCHC 1 cut(s) 263
SfaNI GCATC 2 cut(s) 766, 897
Sse9I AATT 3 cut(s) 34, 543, 959
SsiI CCGC 1 cut(s) 312
SstI GAGCTC 1 cut(s) 263
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 52, 274, 436
TaiI ACGT 4 cut(s) 160, 251, 447, 1023
TaqI TCGA 5 cut(s) 263, 408, 816, 979, 1029
TasI AATT 3 cut(s) 34, 543, 959
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 3 cut(s) 165, 669, 786
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 6 cut(s) 216, 680, 709, 817, 841, 943
TspGWI ACGGA 4 cut(s) 302, 411, 582, 610
XapI RAATTY 3 cut(s) 34, 543, 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 744
XmnI GAANNNNTTC 2 cut(s) 335, 471
ZraI GACGTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.