Rroxscaffold_1G00037580

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001467
Physical Location & Seq
Forward (+)
54754893 .. 54757134
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037580.1

Sequence Viewer

Length: 486 bp
ATGATCCTGATCCACTGGGCATTCGCTGACGAAACTCGCACGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCGTAGGAGCCAAGTTGTTACCCAACCCGGCCACTCTTCGCAATCGGCGGCTTTTGAAACTTGGTCAAAGTGATGGACATGGTGAGGTTTCAGCTATAGAGTACTCGCATATCCCTTCGTTCTCGAACGACATCATTTCGGGCACTAAGGATACGCAGAAATCAAATTTTGGGTCATCAGATTCCCTTGATAGCTTATTTGGCGACAAAGATGCAAGCAGTGCTCTGCAGGTACCGCCGCCATTTTCTGCCTTTATTCATCTATGTAAACACTGCATGCATCATACAGATGATGGTTCTGGTGCTTGTTTTGAATCAGAACGGAATGAGCTTGGGAAAAGACTCTCCCACTTAGATTCGATTCCGGTATATTGGTCGATAATGTTTCGTCTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

161

Amino Acids

17.84

Weight (kDa)

6.43

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AciI CCGC 3 cut(s) 136, 323, 326
AclWI GGATC 2 cut(s) 4, 87
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 2 cut(s) 191, 321
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 145, 401
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 4 cut(s) 67, 182, 282, 418
AluI AGCT 4 cut(s) 67, 182, 282, 418
Alw21I GWGCWC 2 cut(s) 69, 313
AlwI GGATC 2 cut(s) 4, 87
AoxI GGCC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
Asp718I GGTACC 1 cut(s) 319
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 58, 182
BaeGI GKGCMC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 69, 313
BccI CCATC 2 cut(s) 155, 374
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciVI GTATCC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 116
BfmI CTRYAG 2 cut(s) 183, 314
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 2 cut(s) 137, 326
BlsI GCNGC 2 cut(s) 138, 327
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 97, 321
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 2 cut(s) 289, 376
BmuI ACTGGG 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 233
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 69, 313
BsiSI CCGG 2 cut(s) 116, 452
BslI CCNNNNNNNGG 1 cut(s) 76
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 3 cut(s) 69, 233, 313
Bsp143I GATC 3 cut(s) 3, 9, 79
BspACI CCGC 3 cut(s) 136, 323, 326
BspANI GGCC 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 97, 321
BspMAI CTGCAG 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 2 cut(s) 4, 87
BspT107I GGYRCC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 20
BssMI GATC 3 cut(s) 3, 9, 79
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 304, 365
BstDEI CTNAG 2 cut(s) 234, 439
BstKTI GATC 3 cut(s) 6, 12, 82
BstMBI GATC 3 cut(s) 3, 9, 79
BstMWI GCNNNNNNNGC 3 cut(s) 288, 308, 322
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 2 cut(s) 183, 314
BstSLI GKGCMC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 119
BtsI GCAGTG 2 cut(s) 313, 358
BtsIMutI CAGTG 3 cut(s) 13, 313, 358
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 304, 365
Csp6I GTAC 2 cut(s) 190, 320
CviAII CATG 3 cut(s) 76, 167, 364
CviJI RGCY 7 cut(s) 67, 98, 119, 139, 182, 282, 418
CviKI_1 RGCY 7 cut(s) 67, 98, 119, 139, 182, 282, 418
CviQI GTAC 2 cut(s) 190, 320
DdeI CTNAG 2 cut(s) 234, 439
DpnI GATC 3 cut(s) 5, 11, 81
DpnII GATC 3 cut(s) 3, 9, 79
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 3 cut(s) 79, 170, 367
FaiI YATR 8 cut(s) 77, 168, 185, 198, 352, 365, 372, 457
FatI CATG 3 cut(s) 75, 166, 363
Fnu4HI GCNGC 2 cut(s) 137, 326
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 137, 326
GluI GCNGC 2 cut(s) 137, 326
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 116, 452
Hin1II CATG 3 cut(s) 79, 170, 367
HinfI GANTC 5 cut(s) 269, 401, 429, 443, 448
HpaII CCGG 2 cut(s) 116, 452
HphI GGTGA 2 cut(s) 58, 182
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 64, 268, 406
Hpy188III TCNNGA 3 cut(s) 7, 211, 483
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 302, 316, 363, 367
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 308, 322
HpyF3I CTNAG 2 cut(s) 234, 439
Hsp92II CATG 3 cut(s) 79, 170, 367
KpnI GGTACC 1 cut(s) 323
Kzo9I GATC 3 cut(s) 3, 9, 79
LmnI GCTCC 3 cut(s) 64, 72, 95
LpnPI CCDG 5 cut(s) 20, 129, 302, 372, 465
LweI GCATC 2 cut(s) 289, 376
MaeIII GTNAC 1 cut(s) 105
MalI GATC 3 cut(s) 5, 11, 81
MboI GATC 3 cut(s) 3, 9, 79
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 3 cut(s) 69, 233, 313
MluCI AATT 1 cut(s) 253
MlyI GAGTC 1 cut(s) 423
MnlI CCTC 2 cut(s) 80, 166
Mph1103I ATGCAT 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 44, 375
MspI CCGG 2 cut(s) 116, 452
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 288, 308, 322
NciI CCSGG 1 cut(s) 116
NdeII GATC 3 cut(s) 3, 9, 79
NlaIII CATG 3 cut(s) 79, 170, 367
NlaIV GGNNCC 2 cut(s) 97, 321
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 1 cut(s) 367
OliI CACNNNNGTG 1 cut(s) 44
PaeI GCATGC 1 cut(s) 367
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 4 cut(s) 269, 401, 443, 448
PkrI GCNGC 2 cut(s) 138, 327
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 97, 321
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 2 cut(s) 191, 321
RsaNI GTAC 2 cut(s) 190, 320
RseI CAYNNNNRTG 2 cut(s) 44, 375
SacI GAGCTC 1 cut(s) 69
SatI GCNGC 2 cut(s) 137, 326
Sau3AI GATC 3 cut(s) 3, 9, 79
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 69, 233, 313
SetI ASST 6 cut(s) 69, 177, 184, 284, 321, 420
SfaNI GCATC 2 cut(s) 289, 376
SfcI CTRYAG 2 cut(s) 183, 314
SmiMI CAYNNNNRTG 2 cut(s) 44, 375
SphI GCATGC 1 cut(s) 367
Sse9I AATT 1 cut(s) 253
SsiI CCGC 3 cut(s) 136, 323, 326
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 3 cut(s) 212, 446, 464
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 189
TauI GCSGC 2 cut(s) 139, 328
TfiI GAWTC 4 cut(s) 269, 401, 443, 448
TscAI CASTG 3 cut(s) 20, 313, 365
TspDTI ATGAA 2 cut(s) 71, 335
TspGWI ACGGA 2 cut(s) 79, 424
TspRI CASTG 3 cut(s) 20, 313, 365
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 367
ZrmI AGTACT 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.