Rroxscaffold_2G00095040

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001467
Physical Location & Seq
Forward (+)
16373276 .. 16383045
9770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095040.1

Sequence Viewer

Length: 237 bp
ATGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCCGGAACACCTTCTGTTTCAAAGTTAGAAACTCGCCGATGACTGGTCTTTTAACGCGGACCTTAGCCCATGGGTGCCCAGAGCAGAATACGCGTTTGACGCAAGGAGGCTGCCTTGACGTAGTCAAGAAGGTTGGGTGTGGCTCGGATAGCGTTGAAGACATCTTAGGCTATCTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

78

Amino Acids

8.62

Weight (kDa)

8.46

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 129
AccII CGCG 2 cut(s) 112, 148
AciI CCGC 2 cut(s) 42, 112
AcoI YGGCCR 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 2 cut(s) 76, 212
AoxI GGCC 2 cut(s) 39, 55
ApeKI GCWGC 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 152
BceAI ACGGC 2 cut(s) 29, 54
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 2 cut(s) 42, 166
BlsI GCNGC 2 cut(s) 43, 167
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 45, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 45, 124
BseLI CCNNNNNNNGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 134
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 2 cut(s) 112, 148
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 41, 57
BshNI GGYRCC 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 2 cut(s) 41, 57
Bsp1286I GDGCHC 1 cut(s) 134
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 2 cut(s) 42, 112
BspANI GGCC 2 cut(s) 41, 57
BspFNI CGCG 2 cut(s) 112, 148
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 131
BspMI ACCTGC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 45, 124
BssT1I CCWWGG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 118, 220
BstDSI CCRYGG 2 cut(s) 45, 124
BstFNI CGCG 2 cut(s) 112, 148
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 145, 154, 204
BstSLI GKGCMC 1 cut(s) 134
BstUI CGCG 2 cut(s) 112, 148
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 41, 57
BtgI CCRYGG 2 cut(s) 45, 124
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 114
CseI GACGC 1 cut(s) 163
CviAII CATG 2 cut(s) 34, 125
CviJI RGCY 6 cut(s) 41, 57, 122, 165, 198, 225
CviKI_1 RGCY 6 cut(s) 41, 57, 122, 165, 198, 225
DdeI CTNAG 2 cut(s) 118, 220
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 114
Eco52I CGGCCG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 37, 128
FaiI YATR 2 cut(s) 35, 126
FatI CATG 2 cut(s) 33, 124
Fnu4HI GCNGC 2 cut(s) 42, 166
Fsp4HI GCNGC 2 cut(s) 42, 166
GluI GCNGC 2 cut(s) 42, 166
HaeIII GGCC 2 cut(s) 41, 57
HapII CCGG 1 cut(s) 58
HgaI GACGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 37, 128
HpaII CCGG 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 34, 181
HpyAV CCTTC 2 cut(s) 76, 178
HpyCH4IV ACGT 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 154, 204
HpyF3I CTNAG 2 cut(s) 118, 220
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 37, 128
LpnPI CCDG 4 cut(s) 14, 71, 84, 147
Lsp1109I GCAGC 1 cut(s) 152
MaeII ACGT 1 cut(s) 174
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 134
MluI ACGCGT 1 cut(s) 146
MnlI CCTC 2 cut(s) 47, 155
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 107
MspI CCGG 1 cut(s) 58
MvnI CGCG 2 cut(s) 112, 148
MwoI GCNNNNNNNGC 3 cut(s) 145, 154, 204
NcoI CCATGG 1 cut(s) 124
NlaIII CATG 2 cut(s) 37, 128
NlaIV GGNNCC 1 cut(s) 131
PagI TCATGA 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 43, 167
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 42, 166
Sau96I GGNCC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 134
SetI ASST 5 cut(s) 33, 68, 119, 177, 189
SinI GGWCC 1 cut(s) 114
SsiI CCGC 2 cut(s) 42, 112
StyI CCWWGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 177
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseI GCWGC 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 32
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.