Rh3DG350500

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001467
Physical Location & Seq
Reverse (-)
41643601 .. 41654574
10974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG350500.1

Sequence Viewer

Length: 726 bp
ATGAACCTGATCCACTGGGCATTCGCCGATGAAACCCGCACGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTACCCAACCCGGCCACTCTTCGCAAGTCATCTCATCTTCTCGCAATTAATGTTGACGATTTTGTGAGAAATTCTAGTCGGCGGCTTTTGAAACTTGGTCAAAGTGATGGACATGGTGAGGTTCCAGCTATAGAGTACTCGCATATCCCTTCGTTCTCGGACGACGTCATTTCGGGCACTAAGCATGATGATGCAGTAAAATTATTGATTTCTTCACATAGTTCATCAGTTGCTTCTTCTACGACATCGTTTAGGAGCTCGAAGAAGATGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACCTTCCTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTGTGAGCTTATGAAATTTGAGTACCAAAAGAAGGTCGCCTCGCTGAGCAAGCTAAAGAAATGTAGTACTAACTCAGAAGCATTGGAGAAATCAAGAGCAGCAGTTTATTTGACAAAGCACTACAGGAACCGGCGCTTGGGAGACCCTGATTTTGTACTGGATTTTGAAGAGATTTTCGTGATTGATTCCAAGACAAAGTCTATTAGCAGAGCAAAAGTCCTGGCTGGAAGAAAAGCTCCAGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

241

Amino Acids

27.1

Weight (kDa)

9.48

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 391
AciI CCGC 3 cut(s) 37, 187, 414
AclWI GGATC 2 cut(s) 4, 87
AcoI YGGCCR 2 cut(s) 117, 411
AcsI RAATTY 2 cut(s) 175, 491
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 4 cut(s) 242, 500, 544, 633
AfiI CCNNNNNNNGG 5 cut(s) 43, 76, 471, 508, 613
AgsI TTSAA 2 cut(s) 196, 644
AjnI CCWGG 1 cut(s) 696
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 6 cut(s) 67, 233, 363, 484, 529, 713
AluI AGCT 6 cut(s) 67, 233, 363, 484, 529, 713
Alw21I GWGCWC 2 cut(s) 69, 365
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 2 cut(s) 4, 87
AoxI GGCC 2 cut(s) 117, 411
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 2 cut(s) 175, 491
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AseI ATTAAT 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 612
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 58, 233
BaeGI GKGCMC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 69, 365
Bbv12I GWGCWC 2 cut(s) 69, 365
BbvI GCAGC 1 cut(s) 587
BccI CCATC 2 cut(s) 206, 367
BceAI ACGGC 2 cut(s) 401, 426
BciT130I CCWGG 1 cut(s) 698
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 2 cut(s) 234, 598
BfoI RGCGCY 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 3 cut(s) 188, 414, 576
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 3 cut(s) 189, 415, 577
BmcAI AGTACT 2 cut(s) 242, 544
Bme1390I CCNGG 2 cut(s) 116, 698
BmiI GGNNCC 3 cut(s) 97, 228, 605
BmrFI CCNGG 2 cut(s) 116, 698
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 76, 471, 508, 613
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 3 cut(s) 20, 476, 639
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 1 cut(s) 417
BseLI CCNNNNNNNGG 5 cut(s) 43, 76, 471, 508, 613
BseMII CTCAG 2 cut(s) 512, 564
BseNI ACTGG 3 cut(s) 20, 476, 639
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 284
BseX3I CGGCCG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 2 cut(s) 119, 413
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 2 cut(s) 69, 365
BsiSI CCGG 2 cut(s) 116, 607
BslI CCNNNNNNNGG 5 cut(s) 43, 76, 471, 508, 613
BsmAI GTCTC 1 cut(s) 612
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 2 cut(s) 119, 413
Bso31I GGTCTC 1 cut(s) 612
Bsp1286I GDGCHC 3 cut(s) 69, 284, 365
Bsp143I GATC 2 cut(s) 9, 79
Bsp1720I GCTNAGC 1 cut(s) 521
BspACI CCGC 3 cut(s) 37, 187, 414
BspANI GGCC 2 cut(s) 119, 413
BspCNI CTCAG 2 cut(s) 513, 563
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 3 cut(s) 97, 228, 605
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 2 cut(s) 4, 87
BspTNI GGTCTC 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 606
BsrI ACTGG 3 cut(s) 20, 476, 639
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 9, 79
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 129, 639
BstACI GRCGYC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 398, 527
BstDEI CTNAG 3 cut(s) 285, 521, 550
BstDSI CCRYGG 1 cut(s) 417
BstH2I RGCGCY 1 cut(s) 613
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 2 cut(s) 12, 82
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 2 cut(s) 9, 79
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 114, 696
BstSFI CTRYAG 2 cut(s) 234, 598
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BstZI CGGCCG 1 cut(s) 411
BsuRI GGCC 2 cut(s) 119, 413
BtgI CCRYGG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 13
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 398, 527
CciI TCATGA 1 cut(s) 405
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 606
Csp6I GTAC 4 cut(s) 241, 499, 543, 632
CviAII CATG 4 cut(s) 76, 218, 290, 406
CviQI GTAC 4 cut(s) 241, 499, 543, 632
DdeI CTNAG 3 cut(s) 285, 521, 550
DpnI GATC 2 cut(s) 11, 81
DpnII GATC 2 cut(s) 9, 79
EaeI YGGCCR 2 cut(s) 117, 411
EagI CGGCCG 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 129, 639
EarI CTCTTC 2 cut(s) 129, 639
Ecl136II GAGCTC 2 cut(s) 67, 363
EclXI CGGCCG 1 cut(s) 411
Eco24I GRGCYC 2 cut(s) 69, 365
Eco31I GGTCTC 1 cut(s) 612
Eco52I CGGCCG 1 cut(s) 411
Eco53kI GAGCTC 2 cut(s) 67, 363
EcoICRI GAGCTC 2 cut(s) 67, 363
EcoRII CCWGG 1 cut(s) 696
EcoT38I GRGCYC 2 cut(s) 69, 365
FaeI CATG 4 cut(s) 79, 221, 293, 409
FaiI YATR 8 cut(s) 77, 219, 236, 249, 291, 324, 407, 488
FatI CATG 4 cut(s) 75, 217, 289, 405
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 188, 414, 576
FriOI GRGCYC 2 cut(s) 69, 365
Fsp4HI GCNGC 3 cut(s) 188, 414, 576
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 611
GluI GCNGC 3 cut(s) 188, 414, 576
GsuI CTGGAG 1 cut(s) 699
HaeII RGCGCY 1 cut(s) 613
HaeIII GGCC 2 cut(s) 119, 413
HapII CCGG 2 cut(s) 116, 607
HhaI GCGC 1 cut(s) 612
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 4 cut(s) 79, 221, 293, 409
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 2 cut(s) 451, 662
HpaII CCGG 2 cut(s) 116, 607
HphI GGTGA 2 cut(s) 58, 233
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 6 cut(s) 64, 95, 265, 450, 456, 553
Hpy188III TCNNGA 4 cut(s) 406, 570, 655, 716
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 95, 272
HpyAV CCTTC 3 cut(s) 264, 448, 502
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 3 cut(s) 285, 521, 550
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 4 cut(s) 79, 221, 293, 409
HspAI GCGC 1 cut(s) 610
Kzo9I GATC 2 cut(s) 9, 79
LmnI GCTCC 5 cut(s) 64, 72, 95, 360, 718
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 11, 81
MboI GATC 2 cut(s) 9, 79
MboII GAAGA 8 cut(s) 116, 134, 309, 333, 379, 382, 656, 717
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 3 cut(s) 69, 284, 365
MluCI AATT 5 cut(s) 150, 175, 305, 491, 719
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 80, 217, 419, 526
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 44, 294
MspI CCGG 2 cut(s) 116, 607
MspR9I CCNGG 2 cut(s) 116, 698
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 526
NciI CCSGG 1 cut(s) 116
NdeII GATC 2 cut(s) 9, 79
NlaIII CATG 4 cut(s) 79, 221, 293, 409
NlaIV GGNNCC 3 cut(s) 97, 228, 605
OliI CACNNNNGTG 1 cut(s) 44
PagI TCATGA 1 cut(s) 405
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 662
PflFI GACNNNGTC 2 cut(s) 269, 673
PkrI GCNGC 3 cut(s) 189, 415, 577
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PshBI ATTAAT 1 cut(s) 153
Psp124BI GAGCTC 2 cut(s) 69, 365
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 3 cut(s) 97, 228, 605
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 2 cut(s) 269, 673
RsaI GTAC 4 cut(s) 242, 500, 544, 633
RsaNI GTAC 4 cut(s) 241, 499, 543, 632
RseI CAYNNNNRTG 2 cut(s) 44, 294
SacI GAGCTC 2 cut(s) 69, 365
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 188, 414, 576
Sau3AI GATC 2 cut(s) 9, 79
ScaI AGTACT 2 cut(s) 242, 544
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 2 cut(s) 116, 698
SduI GDGCHC 3 cut(s) 69, 284, 365
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 2 cut(s) 234, 598
SmiMI CAYNNNNRTG 2 cut(s) 44, 294
Sse9I AATT 5 cut(s) 150, 175, 305, 491, 719
SsiI CCGC 3 cut(s) 37, 187, 414
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 2 cut(s) 69, 365
StyD4I CCNGG 2 cut(s) 114, 696
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 365
TasI AATT 5 cut(s) 150, 175, 305, 491, 719
TatI WGTACW 3 cut(s) 240, 542, 631
TauI GCSGC 2 cut(s) 190, 416
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 20
TseI GCWGC 1 cut(s) 575
TspDTI ATGAA 5 cut(s) 17, 45, 71, 318, 503
TspGWI ACGGA 2 cut(s) 79, 404
TspRI CASTG 1 cut(s) 20
Tth111I GACNNNGTC 2 cut(s) 269, 673
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 2 cut(s) 175, 491
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 180
ZraI GACGTC 1 cut(s) 271
ZrmI AGTACT 2 cut(s) 242, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.