pycom02g03190

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001467
Physical Location & Seq
Reverse (-)
2071501 .. 2072025
525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03190.3

Sequence Viewer

Length: 420 bp
ATGGAGGGGAGAAGCGACGCCGCAATCGAAACCCTAACAACCAGAGGATGGTGCCTCGGCGACCTCGAACAAGTGGAGGAGAAGATCCTGATCCACCCCGCCTTGTCCGACGACACGCGTGCGGTAGTGAACTCAGTGGAAGCCGAGCTCACCAACATGAACCTTAAATCCATCTCCGCCAGGTCCATGCCCGACCCGCATACGCTCCTAAGGTCCTCTCACCTCCTCCAGAAAATAGATAAAGGGAAAGAAAAATGTGGTCTTTCCTTTGTGTTTTGTTATCAAATGGCTTGGGTAAGGGACGTTGCTAAAAGCAGTATGGAGGATTTTTTGAGGAATTTGAGTCCTGTGGAGTACTCTCACACCCCGGCAATCCCTGACGACGTCGTTCCTGGAGCTAAGGTACTATCTGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

5.32

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 48
AccII CGCG 1 cut(s) 118
AciI CCGC 5 cut(s) 21, 99, 122, 177, 197
AclWI GGATC 2 cut(s) 79, 85
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 2 cut(s) 18, 384
AfaI GTAC 2 cut(s) 356, 405
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 116
AjnI CCWGG 2 cut(s) 179, 391
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 148, 398
AluI AGCT 2 cut(s) 148, 398
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 2 cut(s) 79, 85
ApoI RAATTY 1 cut(s) 337
AspS9I GGNCC 2 cut(s) 183, 213
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 142, 212
AvaII GGWCC 2 cut(s) 183, 213
AxyI CCTNAGG 1 cut(s) 209
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 42, 179
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 2 cut(s) 181, 393
BcnI CCSGG 1 cut(s) 368
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 3 cut(s) 181, 368, 393
Bme18I GGWCC 2 cut(s) 183, 213
BmgT120I GGNCC 2 cut(s) 183, 213
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 3 cut(s) 181, 368, 393
BpmI CTGGAG 2 cut(s) 212, 414
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 2 cut(s) 18, 384
BsaJI CCNNGG 2 cut(s) 55, 366
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse21I CCTNAGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 181, 393
BseDI CCNNGG 2 cut(s) 55, 366
BseGI GGATG 1 cut(s) 53
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 92, 215
Bsh1236I CGCG 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 84, 90
BspACI CCGC 5 cut(s) 21, 99, 122, 177, 197
BspCNI CTCAG 1 cut(s) 146
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 2 cut(s) 79, 85
BspT107I GGYRCC 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 55, 366
BssMI GATC 2 cut(s) 84, 90
BssNI GRCGYC 2 cut(s) 18, 384
Bst2UI CCWGG 2 cut(s) 181, 393
BstACI GRCGYC 2 cut(s) 18, 384
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 133, 209, 399
BstF5I GGATG 1 cut(s) 53
BstFNI CGCG 1 cut(s) 118
BstKTI GATC 2 cut(s) 87, 93
BstMBI GATC 2 cut(s) 84, 90
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 2 cut(s) 181, 393
BstSCI CCNGG 3 cut(s) 179, 366, 391
BstUI CGCG 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 183, 213
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 355, 404
CviAII CATG 2 cut(s) 157, 187
CviJI RGCY 4 cut(s) 143, 148, 290, 398
CviKI_1 RGCY 4 cut(s) 143, 148, 290, 398
CviQI GTAC 2 cut(s) 355, 404
DdeI CTNAG 3 cut(s) 133, 209, 399
DpnI GATC 2 cut(s) 86, 92
DpnII GATC 2 cut(s) 84, 90
EciI GGCGGA 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 183, 213
Eco53kI GAGCTC 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 179, 391
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 2 cut(s) 160, 190
FaiI YATR 4 cut(s) 158, 188, 201, 320
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 156, 186
FauI CCCGC 2 cut(s) 106, 204
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 2 cut(s) 212, 414
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 2 cut(s) 18, 384
Hin1II CATG 2 cut(s) 160, 190
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 368
HphI GGTGA 2 cut(s) 142, 212
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 88, 229, 417
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 4 cut(s) 20, 113, 386, 389
HpyCH4IV ACGT 2 cut(s) 303, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 3 cut(s) 133, 209, 399
HpySE526I ACGT 2 cut(s) 303, 384
Hsp92I GRCGYC 2 cut(s) 18, 384
Hsp92II CATG 2 cut(s) 160, 190
Kzo9I GATC 2 cut(s) 84, 90
LmnI GCTCC 2 cut(s) 210, 395
MaeII ACGT 2 cut(s) 303, 384
MalI GATC 2 cut(s) 86, 92
MboI GATC 2 cut(s) 84, 90
MboII GAAGA 1 cut(s) 94
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 337
MluI ACGCGT 1 cut(s) 116
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 9 cut(s) 38, 65, 70, 74, 226, 233, 236, 316, 327
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 3 cut(s) 181, 368, 393
MvaI CCWGG 2 cut(s) 181, 393
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 368
NdeII GATC 2 cut(s) 84, 90
NlaIII CATG 2 cut(s) 160, 190
NlaIV GGNNCC 1 cut(s) 53
NmeAIII GCCGAG 2 cut(s) 36, 169
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 63
PflFI GACNNNGTC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 48
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 179, 391
PspGI CCWGG 2 cut(s) 179, 391
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 183, 213
PspPPI RGGWCCY 1 cut(s) 213
PsuI RGATCY 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 383
RsaI GTAC 2 cut(s) 356, 405
RsaNI GTAC 2 cut(s) 355, 404
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 84, 90
Sau96I GGNCC 2 cut(s) 183, 213
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 3 cut(s) 181, 368, 393
SduI GDGCHC 1 cut(s) 150
SinI GGWCC 2 cut(s) 183, 213
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 337
SsiI CCGC 5 cut(s) 21, 99, 122, 177, 197
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 179, 366, 391
TaiI ACGT 2 cut(s) 306, 387
TaqI TCGA 2 cut(s) 27, 66
TasI AATT 1 cut(s) 337
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 141
Tth111I GACNNNGTC 1 cut(s) 383
Van91I CCANNNNNTGG 1 cut(s) 48
VpaK11BI GGWCC 2 cut(s) 183, 213
XapI RAATTY 1 cut(s) 337
ZraI GACGTC 1 cut(s) 385
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.