Rorug02G0254800

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001467
Physical Location & Seq
Forward (+)
26701714 .. 26703202
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0254800.1

Sequence Viewer

Length: 765 bp
ATGGGGGAGCCAACAAAATCTGTATCAGAAGAACAGGACCGTCCGTCAGCATCCTCCTCCACCCAGACAACCAACGTACCACCGGCGCCGCCACTTCCCAATCCCAGCACACACTCGAGCCTCCTCCAGCCCTCCATTAAAAAGAAAAACAAAACCAAAGTCTTCCGCGTCTTCAGATCCGTCATCCGATCCTTTCCCATCATCACACCCACAGCATGCAAAATGCCGTCCCTCCCCGGCGGCAAGCTCGATTCCAACCGCACCGTTACTTCCGGTGTCAGAGTCAGCGGCACGCTGTTCGGGTACCGGAAGGGCCGGGTGAGCCTGTCAATACAGGAAAGCTCTAAGACTCTCCCCAGCTTCATTGTCGAGCTAGCCATGCAAACCAACGTGCTGCAGAAGGAGATGAGCTCAGGGATGGTGAGGATCGCTCTCGAGTGCGAGAAGAGAGGTGAAAAAGACAAGACGAAGCTCATGGACGAGCCTGTCTGGACTATGTTTTGCAATGGGAAGAAGACGGGTTATGCGGTTAAGAGGGAGGCCACGGAGGAGGACTTGAATGTCATGGAGCTGCTCAAGGCTGTGACTATGGGAGCGGGCGTGTTGCCCGGGAAGTCAGACGTTGAGGGCCCGGATGGCGAGATGGCGTACATGCGGGCCCTCTTCGAGCGGGTTGTAGGTTCGAAGGATTCCGAAACGTTGTATATGTTGAGCCCGGAAGGGAATAATGGGCCTGAGCTCAGTATTTTCTTTGTAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

254

Amino Acids

27.81

Weight (kDa)

9.28

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 95 - 253 3.7e-72 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 485, 560
Acc65I GGTACC 1 cut(s) 303
AccB1I GGYRCC 2 cut(s) 85, 303
AccBSI CCGCTC 2 cut(s) 596, 670
AccII CGCG 1 cut(s) 168
AciI CCGC 9 cut(s) 89, 166, 240, 259, 288, 527, 596, 655, 670
AclI AACGTT 1 cut(s) 698
AclWI GGATC 3 cut(s) 171, 183, 434
AcuI CTGAAG 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 3 cut(s) 78, 305, 650
AgsI TTSAA 1 cut(s) 559
AhdI GACNNNNNGTC 1 cut(s) 43
AluBI AGCT 8 cut(s) 247, 342, 360, 373, 411, 472, 571, 739
AluI AGCT 8 cut(s) 247, 342, 360, 373, 411, 472, 571, 739
Alw21I GWGCWC 2 cut(s) 413, 741
AlwI GGATC 3 cut(s) 171, 183, 434
Ama87I CYCGRG 3 cut(s) 115, 434, 608
AoxI GGCC 5 cut(s) 313, 540, 628, 657, 731
ApaI GGGCCC 2 cut(s) 632, 661
ApeKI GCWGC 2 cut(s) 394, 571
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
Asp718I GGTACC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 7 cut(s) 37, 313, 628, 629, 657, 658, 731
AsuC2I CCSGG 6 cut(s) 237, 317, 609, 610, 632, 716
AsuHPI GGTGA 3 cut(s) 331, 433, 464
AsuII TTCGAA 1 cut(s) 683
AsuNHI GCTAGC 1 cut(s) 373
AvaI CYCGRG 3 cut(s) 115, 434, 608
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 2 cut(s) 632, 661
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BanI GGYRCC 2 cut(s) 85, 303
BanII GRGCYC 5 cut(s) 413, 632, 661, 716, 741
BbsI GAAGAC 3 cut(s) 154, 163, 521
Bbv12I GWGCWC 2 cut(s) 413, 741
BbvI GCAGC 2 cut(s) 381, 558
BccI CCATC 4 cut(s) 206, 412, 629, 637
BceAI ACGGC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BcnI CCSGG 6 cut(s) 237, 317, 609, 610, 632, 716
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 636
BisI GCNGC 5 cut(s) 89, 241, 289, 395, 572
BlsI GCNGC 5 cut(s) 90, 242, 290, 396, 573
Bme1390I CCNGG 6 cut(s) 237, 317, 609, 610, 632, 716
Bme18I GGWCC 1 cut(s) 37
BmeRI GACNNNNNGTC 1 cut(s) 43
BmeT110I CYCGRG 3 cut(s) 115, 434, 608
BmgT120I GGNCC 7 cut(s) 37, 313, 628, 629, 657, 658, 731
BmiI GGNNCC 5 cut(s) 9, 87, 305, 630, 659
BmrFI CCNGG 6 cut(s) 237, 317, 609, 610, 632, 716
BmsI GCATC 1 cut(s) 59
BmtI GCTAGC 1 cut(s) 377
BpiI GAAGAC 3 cut(s) 154, 163, 521
BplI GAGNNNNNCTC 4 cut(s) 395, 427, 415, 447
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 2 cut(s) 412, 735
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 6 cut(s) 237, 317, 609, 610, 632, 716
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 235, 543, 608
BsaWI WCCGGW 2 cut(s) 272, 306
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bse118I RCCGGY 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 511
BseDI CCNNGG 3 cut(s) 235, 543, 608
BseGI GGATG 4 cut(s) 50, 183, 423, 640
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 3 cut(s) 426, 726, 754
BseRI GAGGAG 3 cut(s) 46, 113, 563
BseSI GKGCMC 2 cut(s) 632, 661
BseXI GCAGC 2 cut(s) 381, 558
BseYI CCCAGC 2 cut(s) 104, 356
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 5 cut(s) 315, 542, 630, 659, 733
BshNI GGYRCC 2 cut(s) 85, 303
BsiHKAI GWGCWC 2 cut(s) 413, 741
BsiHKCI CYCGRG 3 cut(s) 115, 434, 608
BsiSI CCGG 8 cut(s) 83, 237, 273, 307, 316, 609, 632, 716
BslFI GGGAC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 5 cut(s) 315, 542, 630, 659, 733
BsoBI CYCGRG 3 cut(s) 115, 434, 608
Bsp119I TTCGAA 1 cut(s) 683
Bsp120I GGGCCC 2 cut(s) 628, 657
Bsp1286I GDGCHC 5 cut(s) 413, 632, 661, 716, 741
Bsp143I GATC 3 cut(s) 176, 188, 426
BspACI CCGC 9 cut(s) 89, 166, 240, 259, 288, 527, 596, 655, 670
BspANI GGCC 5 cut(s) 315, 542, 630, 659, 733
BspCNI CTCAG 3 cut(s) 425, 727, 753
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 5 cut(s) 9, 87, 305, 630, 659
BspMAI CTGCAG 1 cut(s) 399
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 3 cut(s) 171, 183, 434
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 2 cut(s) 85, 303
BsrBI CCGCTC 2 cut(s) 596, 670
BsrDI GCAATG 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 235, 543, 608
BssMI GATC 3 cut(s) 176, 188, 426
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 41, 265
Bst6I CTCTTC 2 cut(s) 440, 668
BstACI GRCGYC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 6 cut(s) 217, 245, 293, 375, 598, 657
BstDEI CTNAG 4 cut(s) 345, 412, 735, 740
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 4 cut(s) 50, 183, 423, 640
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 179, 191, 429
BstMBI GATC 3 cut(s) 176, 188, 426
BstMWI GCNNNNNNNGC 3 cut(s) 321, 379, 636
BstNSI RCATGY 2 cut(s) 219, 655
BstSCI CCNGG 6 cut(s) 235, 315, 607, 608, 630, 714
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 2 cut(s) 632, 661
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 381, 558
BstV2I GAAGAC 3 cut(s) 154, 163, 521
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 5 cut(s) 315, 542, 630, 659, 733
BtgI CCRYGG 1 cut(s) 543
BtsCI GGATG 4 cut(s) 50, 183, 423, 640
Cac8I GCNNGC 6 cut(s) 217, 245, 293, 375, 598, 657
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 7 cut(s) 37, 313, 628, 629, 657, 658, 731
Cfr9I CCCGGG 1 cut(s) 608
CseI GACGC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 77, 304, 649
CviAII CATG 5 cut(s) 216, 379, 475, 565, 652
CviQI GTAC 3 cut(s) 77, 304, 649
DdeI CTNAG 4 cut(s) 345, 412, 735, 740
DinI GGCGCC 1 cut(s) 87
DpnI GATC 3 cut(s) 178, 190, 428
DpnII GATC 3 cut(s) 176, 188, 426
DrdI GACNNNNNNGTC 2 cut(s) 485, 560
DriI GACNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 2 cut(s) 485, 560
Eam1104I CTCTTC 2 cut(s) 440, 668
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 2 cut(s) 440, 668
Ecl136II GAGCTC 2 cut(s) 411, 739
Eco24I GRGCYC 5 cut(s) 413, 632, 661, 716, 741
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 2 cut(s) 411, 739
Eco57I CTGAAG 1 cut(s) 157
Eco88I CYCGRG 3 cut(s) 115, 434, 608
EcoICRI GAGCTC 2 cut(s) 411, 739
EcoO109I RGGNCCY 2 cut(s) 628, 658
EcoT38I GRGCYC 5 cut(s) 413, 632, 661, 716, 741
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
FaeI CATG 5 cut(s) 219, 382, 478, 568, 655
FaqI GGGAC 1 cut(s) 214
FatI CATG 5 cut(s) 215, 378, 474, 564, 651
FauI CCCGC 3 cut(s) 589, 648, 663
Fnu4HI GCNGC 5 cut(s) 89, 241, 289, 395, 572
FokI GGATG 4 cut(s) 37, 170, 430, 647
FriOI GRGCYC 5 cut(s) 413, 632, 661, 716, 741
Fsp4HI GCNGC 5 cut(s) 89, 241, 289, 395, 572
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 87
GluI GCNGC 5 cut(s) 89, 241, 289, 395, 572
GsaI CCCAGC 2 cut(s) 108, 360
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 5 cut(s) 315, 542, 630, 659, 733
HapII CCGG 8 cut(s) 83, 237, 273, 307, 316, 609, 632, 716
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 5 cut(s) 219, 382, 478, 568, 655
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 4 cut(s) 251, 282, 349, 689
HpaII CCGG 8 cut(s) 83, 237, 273, 307, 316, 609, 632, 716
HphI GGTGA 3 cut(s) 331, 433, 464
Hpy188I TCNGA 6 cut(s) 28, 176, 188, 281, 619, 694
Hpy188III TCNNGA 2 cut(s) 434, 490
HpyAV CCTTC 4 cut(s) 304, 394, 679, 713
HpyCH4III ACNGT 2 cut(s) 41, 265
HpyCH4IV ACGT 4 cut(s) 75, 390, 621, 698
HpyCH4V TGCA 4 cut(s) 219, 382, 397, 504
HpyF10VI GCNNNNNNNGC 3 cut(s) 321, 379, 636
HpyF3I CTNAG 4 cut(s) 345, 412, 735, 740
HpySE526I ACGT 4 cut(s) 75, 390, 621, 698
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 5 cut(s) 219, 382, 478, 568, 655
HspAI GCGC 1 cut(s) 86
KasI GGCGCC 1 cut(s) 85
KpnI GGTACC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 176, 188, 426
LmnI GCTCC 3 cut(s) 7, 568, 593
Lsp1109I GCAGC 2 cut(s) 381, 558
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 374
MaeII ACGT 4 cut(s) 75, 390, 621, 698
MaeIII GTNAC 2 cut(s) 265, 583
MalI GATC 3 cut(s) 178, 190, 428
MbiI CCGCTC 2 cut(s) 596, 670
MboI GATC 3 cut(s) 176, 188, 426
MboII GAAGA 7 cut(s) 41, 154, 163, 457, 523, 526, 655
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 5 cut(s) 413, 632, 661, 716, 741
Mly113I GGCGCC 1 cut(s) 86
MlyI GAGTC 2 cut(s) 291, 343
MmeI TCCRAC 1 cut(s) 279
MseI TTAA 2 cut(s) 138, 531
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 8 cut(s) 83, 237, 273, 307, 316, 609, 632, 716
MspR9I CCNGG 6 cut(s) 237, 317, 609, 610, 632, 716
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 321, 379, 636
NarI GGCGCC 1 cut(s) 86
NciI CCSGG 6 cut(s) 237, 317, 609, 610, 632, 716
NdeII GATC 3 cut(s) 176, 188, 426
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 5 cut(s) 219, 382, 478, 568, 655
NlaIV GGNNCC 5 cut(s) 9, 87, 305, 630, 659
NmuCI GTSAC 1 cut(s) 583
NspI RCATGY 2 cut(s) 219, 655
NspV TTCGAA 1 cut(s) 683
PaeI GCATGC 1 cut(s) 219
PaeR7I CTCGAG 2 cut(s) 115, 434
PfeI GAWTC 2 cut(s) 251, 689
PkrI GCNGC 5 cut(s) 90, 242, 290, 396, 573
PleI GAGTC 2 cut(s) 290, 343
PluTI GGCGCC 1 cut(s) 89
PpsI GAGTC 2 cut(s) 290, 343
Psp124BI GAGCTC 2 cut(s) 413, 741
Psp1406I AACGTT 1 cut(s) 698
PspFI CCCAGC 2 cut(s) 104, 356
PspN4I GGNNCC 5 cut(s) 9, 87, 305, 630, 659
PspOMI GGGCCC 2 cut(s) 628, 657
PspPI GGNCC 7 cut(s) 37, 313, 628, 629, 657, 658, 731
PspXI VCTCGAGB 1 cut(s) 115
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 3 cut(s) 78, 305, 650
RsaNI GTAC 3 cut(s) 77, 304, 649
SacI GAGCTC 2 cut(s) 413, 741
SaqAI TTAA 2 cut(s) 138, 531
SatI GCNGC 5 cut(s) 89, 241, 289, 395, 572
Sau3AI GATC 3 cut(s) 176, 188, 426
Sau96I GGNCC 7 cut(s) 37, 313, 628, 629, 657, 658, 731
SchI GAGTC 2 cut(s) 291, 343
ScrFI CCNGG 6 cut(s) 237, 317, 609, 610, 632, 716
SduI GDGCHC 5 cut(s) 413, 632, 661, 716, 741
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 395
SfoI GGCGCC 1 cut(s) 87
Sfr274I CTCGAG 2 cut(s) 115, 434
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 82
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 2 cut(s) 115, 434
SmaI CCCGGG 1 cut(s) 610
SmlI CTYRAG 3 cut(s) 115, 434, 575
SmoI CTYRAG 3 cut(s) 115, 434, 575
SphI GCATGC 1 cut(s) 219
SsiI CCGC 9 cut(s) 89, 166, 240, 259, 288, 527, 596, 655, 670
SspDI GGCGCC 1 cut(s) 85
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 2 cut(s) 413, 741
StyD4I CCNGG 6 cut(s) 235, 315, 607, 608, 630, 714
TaaI ACNGT 2 cut(s) 41, 265
TaiI ACGT 4 cut(s) 78, 393, 624, 701
TaqI TCGA 6 cut(s) 116, 249, 369, 435, 666, 683
TauI GCSGC 3 cut(s) 91, 243, 291
TfiI GAWTC 2 cut(s) 251, 689
Tru1I TTAA 2 cut(s) 138, 531
Tru9I TTAA 2 cut(s) 138, 531
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 2 cut(s) 394, 571
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 1 cut(s) 352
TspGWI ACGGA 3 cut(s) 33, 169, 560
TspMI CCCGGG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 2 cut(s) 219, 655
XhoI CTCGAG 2 cut(s) 115, 434
XmaI CCCGGG 1 cut(s) 608
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.