Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

2828497 .. 2833006

Gene Structure 4510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTGGCGGCGAACCCTCCCAAATGCCCCTTCTTCCTCACTCAGGACTGCCAGCTGTCCGTCAAGCACGTCAATCCTCGCCAGTACGTCGCCAAAATCCCTGAGCTTTCGAATTTGGAAGTGTGGTTTCAAAGGCCCAAGGACATTGTCAGGAAGTTGCTTTCTGGCGATTTGGACCTCGGCATTGCCGGTCTCGACACCGTCAGTGAATATGCACAGGGGAGTGAAGATCTTATAATTATTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAATTCACTTAATGAGCTGTCACAAATGCCTCAATGGACTAAAGAGAAACCTCTACGAGTTGCTACTGGCTTCACCTATTTGGGTCCTAAATTTGTAAAAGAAAATGGACTGGAGCATGTGAGTTTTTCAACAGCTGATGGAGCACTTGAGGCAGCTCCAGCGATGGGGATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGATACGACACATGAGATTCTAGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTACCAGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTGTTAGTACAGTGTATTGCAAACGTGATGGGAAAATAACTGCAGATTACTATGCCATTGTCATATGTGTACCCAAAAAGGCCCTCTACAAGTCTGTACAACAATTGAGAGCGATCGGAGGTAGTGGGGTTCTATATTCTCCTTTGACTTACATTTTTGATGAAGAAACTCCGAGATGGCGTGAACTCCTCTCAAAACTTGGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

330

Amino Acids

36.13

Weight (kDa)

6.34

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	92 - 268	1.4e-36	ATP phosphoribosyltransferase
HisG_C	PF08029	273 - 357	1.1e-10	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	597
AcsI	RAATTY	2 cut(s)	112, 404
AfaI	GTAC	5 cut(s)	86, 689, 790, 852, 879
AfiI	CCNNNNNNNGG	3 cut(s)	43, 296, 479
AgsI	TTSAA	3 cut(s)	131, 444, 544
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	690
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	7 cut(s)	55, 106, 331, 449, 470, 488, 764
AluI	AGCT	7 cut(s)	55, 106, 331, 449, 470, 488, 764
Alw21I	GWGCWC	3 cut(s)	460, 628, 724
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	2 cut(s)	624, 720
AlwI	GGATC	1 cut(s)	597
AoxI	GGCC	3 cut(s)	134, 861, 982
ApaLI	GTGCAC	2 cut(s)	624, 720
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	112, 404
AseI	ATTAAT	1 cut(s)	315
AspS9I	GGNCC	6 cut(s)	135, 175, 398, 502, 776, 862
AsuHPI	GGTGA	1 cut(s)	379
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	4 cut(s)	175, 398, 502, 776
BaeGI	GKGCMC	2 cut(s)	628, 724
Bbv12I	GWGCWC	3 cut(s)	460, 628, 724
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	5 cut(s)	446, 472, 763, 803, 951
BciT130I	CCWGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	822
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	2 cut(s)	9, 468
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	2 cut(s)	10, 469
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	4 cut(s)	175, 398, 502, 776
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	6 cut(s)	135, 175, 398, 502, 776, 862
BmiI	GGNNCC	3 cut(s)	399, 777, 778
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	2 cut(s)	238, 481
BpmI	CTGGAG	2 cut(s)	446, 456
Bpu10I	CCTNAGC	2 cut(s)	102, 746
Bpu1102I	GCTNAGC	1 cut(s)	735
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	138, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 296, 479
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	82, 385, 429
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	2 cut(s)	138, 178
BseLI	CCNNNNNNNGG	3 cut(s)	43, 296, 479
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	3 cut(s)	56, 93, 726
BseNI	ACTGG	3 cut(s)	82, 385, 429
BseRI	GAGGAG	2 cut(s)	573, 959
BseSI	GKGCMC	2 cut(s)	628, 724
BseXI	GCAGC	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	897
BshFI	GGCC	3 cut(s)	136, 863, 984
BsiEI	CGRYCG	1 cut(s)	897
BsiHKAI	GWGCWC	3 cut(s)	460, 628, 724
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	3 cut(s)	43, 296, 479
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	789
BsnI	GGCC	3 cut(s)	136, 863, 984
Bso31I	GGTCTC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	3 cut(s)	460, 628, 724
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	4 cut(s)	229, 549, 602, 894
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	3 cut(s)	136, 863, 984
BspCNI	CTCAG	3 cut(s)	55, 94, 727
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	399, 777, 778
BspMAI	CTGCAG	1 cut(s)	826
BspPI	GGATC	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	3 cut(s)	82, 385, 429
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	138, 178
BssMI	GATC	4 cut(s)	229, 549, 602, 894
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	3 cut(s)	202, 784, 793
BstAUI	TGTACA	1 cut(s)	877
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	53, 595, 752
BstDEI	CTNAG	4 cut(s)	42, 102, 735, 746
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	232, 552, 605, 897
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	229, 549, 602, 894
BstMCI	CGRYCG	1 cut(s)	897
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 464, 473
BstNI	CCWGG	1 cut(s)	692
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	690
BstSFI	CTRYAG	1 cut(s)	822
BstSLI	GKGCMC	2 cut(s)	628, 724
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	229, 602
BstYI	RGATCY	2 cut(s)	229, 602
BsuRI	GGCC	3 cut(s)	136, 863, 984
BtgZI	GCGATG	1 cut(s)	491
BtrI	CACGTC	1 cut(s)	70
BtsIMutI	CAGTG	4 cut(s)	211, 524, 780, 798
Cac8I	GCNNGC	3 cut(s)	53, 595, 752
CciI	TCATGA	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	6 cut(s)	135, 175, 398, 502, 776, 862
CsiI	ACCWGGT	1 cut(s)	690
Csp6I	GTAC	5 cut(s)	85, 688, 789, 851, 878
CviAII	CATG	3 cut(s)	245, 431, 641
CviQI	GTAC	5 cut(s)	85, 688, 789, 851, 878
DdeI	CTNAG	4 cut(s)	42, 102, 735, 746
DpnI	GATC	4 cut(s)	231, 551, 604, 896
DpnII	GATC	4 cut(s)	229, 549, 602, 894
Eco130I	CCWWGG	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	4 cut(s)	175, 398, 502, 776
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoO109I	RGGNCCY	3 cut(s)	398, 776, 862
EcoRII	CCWGG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	248, 434, 644
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 590, 622
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	3 cut(s)	244, 430, 640
FauNDI	CATATG	1 cut(s)	845
Fnu4HI	GCNGC	2 cut(s)	9, 468
Fsp4HI	GCNGC	2 cut(s)	9, 468
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	2 cut(s)	9, 468
GsuI	CTGGAG	2 cut(s)	446, 456
HaeIII	GGCC	3 cut(s)	136, 863, 984
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	3 cut(s)	248, 434, 644
HinfI	GANTC	2 cut(s)	646, 741
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	4 cut(s)	626, 722, 851, 965
Hpy188I	TCNGA	3 cut(s)	899, 954, 989
Hpy188III	TCNNGA	5 cut(s)	44, 151, 194, 245, 650
Hpy8I	GTNNAC	4 cut(s)	626, 722, 851, 965
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	3 cut(s)	202, 784, 793
HpyCH4IV	ACGT	3 cut(s)	69, 87, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 464, 473
HpyF3I	CTNAG	4 cut(s)	42, 102, 735, 746
HpySE526I	ACGT	3 cut(s)	69, 87, 805
Hsp92II	CATG	3 cut(s)	248, 434, 644
KflI	GGGWCCC	1 cut(s)	776
Kzo9I	GATC	4 cut(s)	229, 549, 602, 894
LmnI	GCTCC	3 cut(s)	427, 455, 475
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	2 cut(s)	238, 481
MabI	ACCWGGT	1 cut(s)	690
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	3 cut(s)	69, 87, 805
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	4 cut(s)	231, 551, 604, 896
MboI	GATC	4 cut(s)	229, 549, 602, 894
MboII	GAAGA	3 cut(s)	25, 239, 956
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	2 cut(s)	229, 602
MhlI	GDGCHC	3 cut(s)	460, 628, 724
MluCI	AATT	7 cut(s)	112, 237, 316, 404, 495, 538, 884
MlyI	GAGTC	1 cut(s)	750
MseI	TTAA	2 cut(s)	315, 324
MspA1I	CMGCKG	2 cut(s)	55, 449
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	692
MunI	CAATTG	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	692
MwoI	GCNNNNNNNGC	3 cut(s)	455, 464, 473
NdeI	CATATG	1 cut(s)	845
NdeII	GATC	4 cut(s)	229, 549, 602, 894
NlaIII	CATG	3 cut(s)	248, 434, 644
NlaIV	GGNNCC	3 cut(s)	399, 777, 778
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	110
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	646
PflFI	GACNNNGTC	2 cut(s)	146, 200
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	10, 469
Ple19I	CGATCG	1 cut(s)	897
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
PpuMI	RGGWCCY	2 cut(s)	398, 776
PshBI	ATTAAT	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	236
Psp5II	RGGWCCY	2 cut(s)	398, 776
Psp6I	CCWGG	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	3 cut(s)	399, 777, 778
PspPI	GGNCC	6 cut(s)	135, 175, 398, 502, 776, 862
PspPPI	RGGWCCY	2 cut(s)	398, 776
PstI	CTGCAG	1 cut(s)	826
PsuI	RGATCY	2 cut(s)	229, 602
PsyI	GACNNNGTC	2 cut(s)	146, 200
PvuI	CGATCG	1 cut(s)	897
PvuII	CAGCTG	2 cut(s)	55, 449
RsaI	GTAC	5 cut(s)	86, 689, 790, 852, 879
RsaNI	GTAC	5 cut(s)	85, 688, 789, 851, 878
SaqAI	TTAA	2 cut(s)	315, 324
SatI	GCNGC	2 cut(s)	9, 468
Sau3AI	GATC	4 cut(s)	229, 549, 602, 894
Sau96I	GGNCC	6 cut(s)	135, 175, 398, 502, 776, 862
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	3 cut(s)	460, 628, 724
SexAI	ACCWGGT	1 cut(s)	690
SfaNI	GCATC	2 cut(s)	238, 481
SfcI	CTRYAG	1 cut(s)	822
SfuI	TTCGAA	1 cut(s)	110
SinI	GGWCC	4 cut(s)	175, 398, 502, 776
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	7 cut(s)	112, 237, 316, 404, 495, 538, 884
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	1 cut(s)	690
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	202, 784, 793
TaiI	ACGT	3 cut(s)	72, 90, 808
TaqI	TCGA	3 cut(s)	110, 195, 552
TasI	AATT	7 cut(s)	112, 237, 316, 404, 495, 538, 884
TatI	WGTACW	2 cut(s)	788, 877
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	2 cut(s)	315, 324
Tru9I	TTAA	2 cut(s)	315, 324
TscAI	CASTG	4 cut(s)	211, 531, 787, 798
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	3 cut(s)	233, 632, 957
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	4 cut(s)	211, 531, 787, 798
Tth111I	GACNNNGTC	2 cut(s)	146, 200
Van91I	CCANNNNNTGG	1 cut(s)	296
VneI	GTGCAC	2 cut(s)	624, 720
VpaK11BI	GGWCC	4 cut(s)	175, 398, 502, 776
VspI	ATTAAT	1 cut(s)	315
XagI	CCTNNNNNAGG	1 cut(s)	41
XapI	RAATTY	2 cut(s)	112, 404
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.