Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

69382058 .. 69385667

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCCTCCTCTTCGTCACACGTTTCCAAATCACCTGTGCTGCATCGTGGTCGGAAAGGAACGAGATCCATCTGGGGCTGCGACAATCATCGTCAATATGTTGCTCAAATCCCGCAGCTTCTTGTTGCAGTTATTGAAGTGTGGCTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTCTGTGAATTTGGACAGGTATCTACTCTTGGGTATGAGGAGTGCCGCTTATCCCTTGCAAATATAAATTCTCTGGACGAGTTAATGGGGATAGCTGATGTGATTTTGGACCTTATGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTACATTTGCAGTTCTTGTTGCTAGCAAAAGATCCTTTCTCCGAAGGAAAAATTCAATAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATCGAAAGGCAGAGGGCATTCATGGTGCAGTCCTTAGGGAACTTAGCCAGCCATTATTATCTGGTTTGCGGTTTATCGCAAAGGTGATGAAAGAAACAGTTGATTACTATGCCATTAACATATGTCTACCGGAAGAGAGTGGAGGCAGTGGGGTTATAGTTATCCCTTCTTCGACTTACATTTTTGACGAAGAAACTCTAAGATGGCCTGAACTTCTCTCAAACTTGGTCTCTAGTTCTGTGTGGTTTATGTATGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

243

Amino Acids

26.98

Weight (kDa)

6.44

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	101 - 154	8.9e-06	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	595
AccII	CGCG	1 cut(s)	437
AciI	CCGC	4 cut(s)	113, 169, 265, 538
AclWI	GGATC	2 cut(s)	60, 399
AcsI	RAATTY	3 cut(s)	227, 286, 424
AcvI	CACGTG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	340
AflIII	ACRYGT	2 cut(s)	19, 440
AgsI	TTSAA	3 cut(s)	137, 149, 429
AluBI	AGCT	2 cut(s)	118, 314
AluI	AGCT	2 cut(s)	118, 314
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	2 cut(s)	60, 399
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	3 cut(s)	40, 78, 115
ApoI	RAATTY	3 cut(s)	227, 286, 424
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	24, 565
AsuNHI	GCTAGC	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	328
AxyI	CCTNAGG	1 cut(s)	503
BbrPI	CACGTG	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	27, 65, 127
BccI	CCATC	2 cut(s)	77, 666
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	2 cut(s)	396, 702
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	4 cut(s)	41, 79, 116, 265
BlsI	GCNGC	4 cut(s)	42, 80, 117, 266
BmcAI	AGTACT	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	52, 454
BmtI	GCTAGC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	598
Bse1I	ACTGG	1 cut(s)	346
Bse21I	CCTNAGG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	3 cut(s)	27, 65, 127
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	703
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	676
Bso31I	GGTCTC	1 cut(s)	703
Bsp143I	GATC	2 cut(s)	65, 404
BspACI	CCGC	4 cut(s)	113, 169, 265, 538
BspANI	GGCC	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	437
BspOI	GCTAGC	1 cut(s)	399
BspPI	GGATC	2 cut(s)	60, 399
BspTNI	GGTCTC	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	65, 404
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	220, 568
Bst6I	CTCTTC	2 cut(s)	16, 597
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	397, 518
BstDEI	CTNAG	3 cut(s)	503, 512, 668
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	437
BstKTI	GATC	2 cut(s)	68, 407
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	2 cut(s)	65, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	27, 65, 127
BstX2I	RGATCY	2 cut(s)	65, 404
BstYI	RGATCY	2 cut(s)	65, 404
Bsu36I	CCTNAGG	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	397, 518
Cfr13I	GGNCC	1 cut(s)	328
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	7 cut(s)	78, 118, 145, 314, 516, 520, 676
CviKI_1	RGCY	7 cut(s)	78, 118, 145, 314, 516, 520, 676
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	503, 512, 668
DpnI	GATC	2 cut(s)	67, 406
DpnII	GATC	2 cut(s)	65, 404
Eam1104I	CTCTTC	2 cut(s)	16, 597
EarI	CTCTTC	2 cut(s)	16, 597
Eco130I	CCWWGG	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	328
Eco72I	CACGTG	1 cut(s)	443
Eco81I	CCTNAGG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	1 cut(s)	494
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	590
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	41, 79, 116, 265
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	4 cut(s)	41, 79, 116, 265
FspBI	CTAG	2 cut(s)	396, 702
GluI	GCNGC	4 cut(s)	41, 79, 116, 265
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	1 cut(s)	494
HinfI	GANTC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	2 cut(s)	24, 565
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	2 cut(s)	54, 416
Hpy188III	TCNNGA	2 cut(s)	293, 452
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	2 cut(s)	411, 645
HpyCH4III	ACNGT	2 cut(s)	220, 568
HpyCH4IV	ACGT	2 cut(s)	21, 442
HpyCH4V	TGCA	6 cut(s)	43, 128, 278, 383, 467, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	3 cut(s)	503, 512, 668
HpySE526I	ACGT	2 cut(s)	21, 442
Hsp92II	CATG	1 cut(s)	494
Kzo9I	GATC	2 cut(s)	65, 404
Lsp1109I	GCAGC	3 cut(s)	27, 65, 127
LweI	GCATC	2 cut(s)	52, 454
MaeI	CTAG	2 cut(s)	396, 702
MaeII	ACGT	2 cut(s)	21, 442
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	2 cut(s)	67, 406
MboI	GATC	2 cut(s)	65, 404
MboII	GAAGA	4 cut(s)	3, 614, 630, 671
MflI	RGATCY	2 cut(s)	65, 404
MluCI	AATT	4 cut(s)	227, 286, 372, 424
MmeI	TCCRAC	2 cut(s)	32, 441
MnlI	CCTC	7 cut(s)	16, 19, 250, 339, 362, 475, 605
MseI	TTAA	2 cut(s)	302, 585
MspI	CCGG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	486
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	2 cut(s)	65, 404
NheI	GCTAGC	1 cut(s)	395
NlaIII	CATG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	15
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	42, 80, 117, 266
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	443
PspCI	CACGTG	1 cut(s)	443
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	65, 404
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	302, 585
SatI	GCNGC	4 cut(s)	41, 79, 116, 265
Sau3AI	GATC	2 cut(s)	65, 404
Sau96I	GGNCC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	52, 454
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	328
Sse9I	AATT	4 cut(s)	227, 286, 372, 424
SsiI	CCGC	4 cut(s)	113, 169, 265, 538
SspMI	CTAG	2 cut(s)	396, 702
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	220, 568
TaiI	ACGT	2 cut(s)	24, 445
TaqI	TCGA	3 cut(s)	453, 472, 641
TasI	AATT	4 cut(s)	227, 286, 372, 424
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	2 cut(s)	302, 585
Tru9I	TTAA	2 cut(s)	302, 585
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	40, 78, 115
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	479, 572
TspRI	CASTG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	3 cut(s)	227, 286, 424
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	2 cut(s)	396, 702
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.