Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

13935280 .. 13937474

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTCCCTGTTTCCCACTGCTCGCTCGGTTCCCATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCGTCTGGGGCTGCCCGGCAAAGGCCGCATCGACAGTGACACTCGCAATTTCCTCAACAATTGTGAATTACCTGTTAAGCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGCTTCTTGTTGCAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTTTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGCAGTTCTTGTTGCTAGCAAGAGATCCTTGCTCGGAAGGAAAAATTCACTAGACGCGACACTGGCAATAGTGCACAAGAAGTGCATGTGTGAGAGAGTCCTTAGCCAGCCATTATTATCTGGTTTGCGGGGCCCGACTGTAAGTCCAGTTTATCGCAAAGGTGATGATGGGAAAGAAACAGTTGATTACTATGCCATTATCATATGTCTACCGGAAGAGGCACCCTACGAGTCTGTAAAACAACTGAGATCGATTGGAGGCAGTGGGGTTATAGTTATCCCTTCTTCGACTTACATTTTTGATGAAGAAACTCCTCCAAGATGGCCTGAACTTCTCTCAAACCTTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

345

Amino Acids

37.74

Weight (kDa)

5.79

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	85 - 243	6e-29	ATP phosphoribosyltransferase
HisG_C	PF08029	266 - 322	4.5e-07	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	904
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	892
AccII	CGCG	1 cut(s)	740
AciI	CCGC	4 cut(s)	127, 271, 391, 811
AclWI	GGATC	2 cut(s)	94, 702
AcsI	RAATTY	4 cut(s)	329, 436, 524, 727
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	3 cut(s)	122, 416, 599
AgsI	TTSAA	3 cut(s)	239, 251, 547
AhdI	GACNNNNNGTC	1 cut(s)	825
AluBI	AGCT	4 cut(s)	220, 569, 590, 608
AluI	AGCT	4 cut(s)	220, 569, 590, 608
Alw21I	GWGCWC	2 cut(s)	580, 759
Alw44I	GTGCAC	1 cut(s)	755
AlwI	GGATC	2 cut(s)	94, 702
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	3 cut(s)	124, 814, 1007
ApaI	GGGCCC	1 cut(s)	818
ApaLI	GTGCAC	1 cut(s)	755
ApeKI	GCWGC	3 cut(s)	74, 112, 587
ApoI	RAATTY	4 cut(s)	329, 436, 524, 727
AspS9I	GGNCC	4 cut(s)	518, 622, 814, 815
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	55, 499, 857
AsuNHI	GCTAGC	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	518, 622
BaeGI	GKGCMC	2 cut(s)	759, 818
BanI	GGYRCC	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	818
Bbv12I	GWGCWC	2 cut(s)	580, 759
BbvI	GCAGC	3 cut(s)	61, 99, 599
BccI	CCATC	4 cut(s)	566, 592, 845, 999
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcnI	CCSGG	1 cut(s)	117
BfaI	CTAG	3 cut(s)	699, 734, 1036
BfmI	CTRYAG	1 cut(s)	258
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	5 cut(s)	75, 113, 127, 391, 588
BlsI	GCNGC	5 cut(s)	76, 114, 128, 392, 589
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	518, 622
BmeRI	GACNNNNNGTC	1 cut(s)	825
BmgT120I	GGNCC	4 cut(s)	518, 622, 814, 815
BmiI	GGNNCC	5 cut(s)	30, 519, 815, 816, 906
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	86, 138, 358
BmtI	GCTAGC	1 cut(s)	702
BmuI	ACTGGG	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
Bpu10I	CCTNAGC	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	935
BsaJI	CCNNGG	2 cut(s)	298, 1027
BsaWI	WCCGGW	1 cut(s)	895
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 416, 599
Bse1I	ACTGG	4 cut(s)	505, 640, 750, 830
BseCI	ATCGAT	1 cut(s)	935
BseDI	CCNNGG	2 cut(s)	298, 1027
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	122, 416, 599
BseMII	CTCAG	1 cut(s)	920
BseNI	ACTGG	4 cut(s)	505, 640, 750, 830
BseRI	GAGGAG	2 cut(s)	31, 987
BseSI	GKGCMC	2 cut(s)	759, 818
BseXI	GCAGC	3 cut(s)	61, 99, 599
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	3 cut(s)	126, 816, 1009
BshNI	GGYRCC	1 cut(s)	904
BshVI	ATCGAT	1 cut(s)	935
BsiHKAI	GWGCWC	2 cut(s)	580, 759
BsiSI	CCGG	2 cut(s)	117, 896
BslI	CCNNNNNNNGG	3 cut(s)	122, 416, 599
BsnI	GGCC	3 cut(s)	126, 816, 1009
Bsp120I	GGGCCC	1 cut(s)	814
Bsp1286I	GDGCHC	3 cut(s)	580, 759, 818
Bsp143I	GATC	4 cut(s)	99, 349, 707, 932
BspACI	CCGC	4 cut(s)	127, 271, 391, 811
BspANI	GGCC	3 cut(s)	126, 816, 1009
BspCNI	CTCAG	1 cut(s)	921
BspDI	ATCGAT	1 cut(s)	935
BspFNI	CGCG	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	5 cut(s)	30, 519, 815, 816, 906
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	2 cut(s)	94, 702
BspT107I	GGYRCC	1 cut(s)	904
BsrBI	CCGCTC	1 cut(s)	393
BsrI	ACTGG	4 cut(s)	505, 640, 750, 830
BssECI	CCNNGG	2 cut(s)	298, 1027
BssMI	GATC	4 cut(s)	99, 349, 707, 932
BssT1I	CCWWGG	2 cut(s)	298, 1027
Bst4CI	ACNGT	5 cut(s)	137, 322, 416, 823, 865
Bst6I	CTCTTC	2 cut(s)	49, 894
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	22, 700, 791
BstDEI	CTNAG	2 cut(s)	785, 929
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	740
BstKTI	GATC	4 cut(s)	102, 352, 710, 935
BstMBI	GATC	4 cut(s)	99, 349, 707, 932
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 277, 575, 584, 593, 746
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	2 cut(s)	759, 818
BstUI	CGCG	1 cut(s)	740
BstV1I	GCAGC	3 cut(s)	61, 99, 599
BstX2I	RGATCY	3 cut(s)	99, 349, 707
BstYI	RGATCY	3 cut(s)	99, 349, 707
Bsu15I	ATCGAT	1 cut(s)	935
BsuRI	GGCC	3 cut(s)	126, 816, 1009
BsuTUI	ATCGAT	1 cut(s)	935
BtgZI	GCGATG	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	2 cut(s)	15, 952
BtsIMutI	CAGTG	4 cut(s)	15, 142, 743, 952
Cac8I	GCNNGC	3 cut(s)	22, 700, 791
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	4 cut(s)	518, 622, 814, 815
ClaI	ATCGAT	1 cut(s)	935
CseI	GACGC	1 cut(s)	746
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	5 cut(s)	34, 81, 365, 551, 769
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	2 cut(s)	785, 929
DpnI	GATC	4 cut(s)	101, 351, 709, 934
DpnII	GATC	4 cut(s)	99, 349, 707, 932
DriI	GACNNNNNGTC	1 cut(s)	825
Eam1104I	CTCTTC	2 cut(s)	49, 894
Eam1105I	GACNNNNNGTC	1 cut(s)	825
EarI	CTCTTC	2 cut(s)	49, 894
Eco130I	CCWWGG	2 cut(s)	298, 1027
Eco24I	GRGCYC	1 cut(s)	818
Eco47I	GGWCC	2 cut(s)	518, 622
EcoO109I	RGGNCCY	2 cut(s)	518, 814
EcoT14I	CCWWGG	2 cut(s)	298, 1027
EcoT38I	GRGCYC	1 cut(s)	818
ErhI	CCWWGG	2 cut(s)	298, 1027
FaeI	CATG	5 cut(s)	37, 84, 368, 554, 772
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FatI	CATG	5 cut(s)	33, 80, 364, 550, 768
FauI	CCCGC	1 cut(s)	804
FauNDI	CATATG	1 cut(s)	887
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	5 cut(s)	75, 113, 127, 391, 588
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	818
Fsp4HI	GCNGC	5 cut(s)	75, 113, 127, 391, 588
FspBI	CTAG	3 cut(s)	699, 734, 1036
GluI	GCNGC	5 cut(s)	75, 113, 127, 391, 588
HaeIII	GGCC	3 cut(s)	126, 816, 1009
HapII	CCGG	2 cut(s)	117, 896
HgaI	GACGC	1 cut(s)	746
Hin1II	CATG	5 cut(s)	37, 84, 368, 554, 772
HinfI	GANTC	2 cut(s)	780, 914
HpaII	CCGG	2 cut(s)	117, 896
HphI	GGTGA	3 cut(s)	55, 499, 857
Hpy166II	GTNNAC	2 cut(s)	757, 893
Hpy188I	TCNGA	2 cut(s)	88, 719
Hpy188III	TCNNGA	2 cut(s)	365, 443
Hpy8I	GTNNAC	2 cut(s)	757, 893
HpyAV	CCTTC	2 cut(s)	714, 975
HpyCH4III	ACNGT	5 cut(s)	137, 322, 416, 823, 865
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	77, 230, 404, 757, 768
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 277, 575, 584, 593, 746
HpyF3I	CTNAG	2 cut(s)	785, 929
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	5 cut(s)	37, 84, 368, 554, 772
Kzo9I	GATC	4 cut(s)	99, 349, 707, 932
LmnI	GCTCC	2 cut(s)	575, 595
Lsp1109I	GCAGC	3 cut(s)	61, 99, 599
LweI	GCATC	3 cut(s)	86, 138, 358
MaeI	CTAG	3 cut(s)	699, 734, 1036
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	48, 137
MalI	GATC	4 cut(s)	101, 351, 709, 934
MbiI	CCGCTC	1 cut(s)	393
MboI	GATC	4 cut(s)	99, 349, 707, 932
MboII	GAAGA	5 cut(s)	36, 359, 911, 960, 1001
MfeI	CAATTG	1 cut(s)	160
MflI	RGATCY	3 cut(s)	99, 349, 707
MhlI	GDGCHC	3 cut(s)	580, 759, 818
MluCI	AATT	8 cut(s)	148, 160, 167, 329, 436, 524, 666, 727
MlyI	GAGTC	2 cut(s)	789, 923
MmeI	TCCRAC	1 cut(s)	66
MseI	TTAA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	117, 896
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	6 cut(s)	126, 277, 575, 584, 593, 746
NciI	CCSGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	887
NdeII	GATC	4 cut(s)	99, 349, 707, 932
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	5 cut(s)	37, 84, 368, 554, 772
NlaIV	GGNNCC	5 cut(s)	30, 519, 815, 816, 906
NmuCI	GTSAC	2 cut(s)	48, 137
NspI	RCATGY	1 cut(s)	772
PagI	TCATGA	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	5 cut(s)	76, 114, 128, 392, 589
PleI	GAGTC	2 cut(s)	788, 922
PpsI	GAGTC	2 cut(s)	788, 922
PpuMI	RGGWCCY	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	518
PspN4I	GGNNCC	5 cut(s)	30, 519, 815, 816, 906
PspOMI	GGGCCC	1 cut(s)	814
PspPI	GGNCC	4 cut(s)	518, 622, 814, 815
PspPPI	RGGWCCY	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	3 cut(s)	99, 349, 707
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	5 cut(s)	75, 113, 127, 391, 588
Sau3AI	GATC	4 cut(s)	99, 349, 707, 932
Sau96I	GGNCC	4 cut(s)	518, 622, 814, 815
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	2 cut(s)	789, 923
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	3 cut(s)	580, 759, 818
SfaNI	GCATC	3 cut(s)	86, 138, 358
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	518, 622
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	8 cut(s)	148, 160, 167, 329, 436, 524, 666, 727
SsiI	CCGC	4 cut(s)	127, 271, 391, 811
SspMI	CTAG	3 cut(s)	699, 734, 1036
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	298, 1027
TaaI	ACNGT	5 cut(s)	137, 322, 416, 823, 865
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	132, 935, 971
TasI	AATT	8 cut(s)	148, 160, 167, 329, 436, 524, 666, 727
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	2 cut(s)	129, 393
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	4 cut(s)	22, 142, 750, 952
TseFI	GTSAC	2 cut(s)	48, 137
TseI	GCWGC	3 cut(s)	74, 112, 587
Tsp45I	GTSAC	2 cut(s)	48, 137
TspDTI	ATGAA	4 cut(s)	353, 360, 545, 1002
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	4 cut(s)	22, 142, 750, 952
Van91I	CCANNNNNTGG	1 cut(s)	416
VneI	GTGCAC	1 cut(s)	755
VpaK11BI	GGWCC	2 cut(s)	518, 622
XapI	RAATTY	4 cut(s)	329, 436, 524, 727
XceI	RCATGY	1 cut(s)	772
XmiI	GTMKAC	1 cut(s)	892
XspI	CTAG	3 cut(s)	699, 734, 1036
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.