Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000724.1

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

445 .. 2069

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000724.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggggatagctgatgcaattttggaccttgtgagtagtgggataacactgaaagaaaacaatctgaaagagatcgagggaggagttgtgttgcgaagtcaagcagttcttgttgcaagcaagagatccttgctcaaaatgaaaagtgcacttgaaacgacacatgagattctggaaagattggaggcgcatctaaaggcagagggtcagtatacggtggttgcaaatgtgaggggaaatagtgcacaagaagtggctgagcgagtccttagccagccatcattagctggtttgcagggacccactataagtacagtgtattgcaaacgtgatgggcaaataaaagcagattactatgccatcgtcatatgtgtgccaaaaaaggccctctacaagtctgtacaacaattgagagcgatcggaggcagtggggttctatattcccctttgacttacatttttgatgaagaaactccaagatggcgtgaacttctctcaaaacttggcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

170

Amino Acids

18.57

Weight (kDa)

8.83

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	313, 402
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	2 cut(s)	11, 287
AluI	AGCT	2 cut(s)	11, 287
Alw21I	GWGCWC	2 cut(s)	151, 247
Alw44I	GTGCAC	2 cut(s)	147, 243
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	384, 505
ApaLI	GTGCAC	2 cut(s)	147, 243
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	3 cut(s)	25, 299, 385
AvaII	GGWCC	2 cut(s)	25, 299
BaeGI	GKGCMC	2 cut(s)	151, 247
Bbv12I	GWGCWC	2 cut(s)	151, 247
BccI	CCATC	4 cut(s)	286, 326, 368, 474
BlpI	GCTNAGC	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	25, 299
BmgT120I	GGNCC	3 cut(s)	25, 299, 385
BmiI	GGNNCC	2 cut(s)	300, 301
BmsI	GCATC	2 cut(s)	4, 199
Bpu10I	CCTNAGC	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	2 cut(s)	151, 247
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	386, 507
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	2 cut(s)	151, 247
BslFI	GGGAC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	386, 507
Bsp1286I	GDGCHC	2 cut(s)	151, 247
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	72, 125, 417
Bsp1720I	GCTNAGC	1 cut(s)	258
BspANI	GGCC	2 cut(s)	386, 507
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	300, 301
BspPI	GGATC	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	400
BssMI	GATC	3 cut(s)	72, 125, 417
BssNAI	GTATAC	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	217, 316
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	118, 275
BstDEI	CTNAG	2 cut(s)	258, 269
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	75, 128, 420
BstMBI	GATC	3 cut(s)	72, 125, 417
BstMCI	CGRYCG	1 cut(s)	420
BstSLI	GKGCMC	2 cut(s)	151, 247
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	386, 507
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	3 cut(s)	47, 321, 433
Cac8I	GCNNGC	2 cut(s)	118, 275
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	25, 299, 385
Csp6I	GTAC	2 cut(s)	312, 401
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	7 cut(s)	11, 257, 273, 277, 287, 386, 507
CviKI_1	RGCY	7 cut(s)	11, 257, 273, 277, 287, 386, 507
CviQI	GTAC	2 cut(s)	312, 401
DdeI	CTNAG	2 cut(s)	258, 269
DpnI	GATC	3 cut(s)	74, 127, 419
DpnII	GATC	3 cut(s)	72, 125, 417
Eco47I	GGWCC	2 cut(s)	25, 299
EcoO109I	RGGNCCY	2 cut(s)	299, 385
FaeI	CATG	1 cut(s)	167
FaiI	YATR	7 cut(s)	165, 213, 308, 357, 368, 370, 439
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 113, 145
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	212
GlaI	GCGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	386, 507
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	169, 264
Hpy166II	GTNNAC	4 cut(s)	149, 213, 245, 488
Hpy188I	TCNGA	2 cut(s)	66, 422
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	4 cut(s)	149, 213, 245, 488
HpyCH4III	ACNGT	2 cut(s)	217, 316
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	7 cut(s)	17, 116, 149, 224, 245, 295, 324
HpyF3I	CTNAG	2 cut(s)	258, 269
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	188
KflI	GGGWCCC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	72, 125, 417
LpnPI	CCDG	4 cut(s)	158, 273, 281, 287
LweI	GCATC	2 cut(s)	4, 199
MaeII	ACGT	1 cut(s)	328
MalI	GATC	3 cut(s)	74, 127, 419
MboI	GATC	3 cut(s)	72, 125, 417
MboII	GAAGA	1 cut(s)	479
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	2 cut(s)	151, 247
MluCI	AATT	2 cut(s)	18, 407
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	70, 74, 178, 196, 225, 398, 416
MslI	CAYNNNNRTG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	407
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	3 cut(s)	72, 125, 417
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	300, 301
PfeI	GAWTC	1 cut(s)	169
Ple19I	CGATCG	1 cut(s)	420
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	300, 301
PspPI	GGNCC	3 cut(s)	25, 299, 385
PspPPI	RGGWCCY	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	125
PvuI	CGATCG	1 cut(s)	420
RsaI	GTAC	2 cut(s)	313, 402
RsaNI	GTAC	2 cut(s)	312, 401
RseI	CAYNNNNRTG	1 cut(s)	371
Sau3AI	GATC	3 cut(s)	72, 125, 417
Sau96I	GGNCC	3 cut(s)	25, 299, 385
SchI	GAGTC	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	151, 247
SetI	ASST	4 cut(s)	13, 30, 289, 331
SfaNI	GCATC	2 cut(s)	4, 199
SinI	GGWCC	2 cut(s)	25, 299
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	18, 407
TaaI	ACNGT	2 cut(s)	217, 316
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	18, 407
TatI	WGTACW	2 cut(s)	311, 400
TfiI	GAWTC	1 cut(s)	169
TscAI	CASTG	3 cut(s)	54, 321, 433
TspDTI	ATGAA	2 cut(s)	155, 480
TspRI	CASTG	3 cut(s)	54, 321, 433
VneI	GTGCAC	2 cut(s)	147, 243
VpaK11BI	GGWCC	2 cut(s)	25, 299
XmiI	GTMKAC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.