Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

8734324 .. 8741765

Gene Structure 7442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55128

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAACCAGAGAGAAACCTCTGCAAGTTTCTACTGGCTTCACCTATGTAAGCAATGTTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCAGTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGGCCTTGTGAGTAGTGGGATAACACTAAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAGAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTACACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATCGCCATATATGTGCCAAAAAAGGCCCTCTACAAGTCTGTACGACAATTGAGAGCGGTTTGTACTGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

191

Amino Acids

20.71

Weight (kDa)

9.02

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	23 - 109	1.5e-18	ATP phosphoribosyltransferase
HisG_C	PF08029	114 - 188	8.7e-07	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	353
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	4 cut(s)	385, 454, 543, 565
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	208, 296
AluBI	AGCT	4 cut(s)	113, 134, 152, 428
AluI	AGCT	4 cut(s)	113, 134, 152, 428
Alw21I	GWGCWC	1 cut(s)	292
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	166, 525
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	5 cut(s)	62, 91, 166, 440, 526
AsuHPI	GGTGA	1 cut(s)	32
AvaII	GGWCC	3 cut(s)	62, 91, 440
BaeGI	GKGCMC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	5 cut(s)	110, 136, 427, 467, 509
BisI	GCNGC	1 cut(s)	132
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	3 cut(s)	62, 91, 440
BmgT120I	GGNCC	5 cut(s)	62, 91, 166, 440, 526
BmiI	GGNNCC	4 cut(s)	63, 64, 441, 442
BmsI	GCATC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	38, 93
Bse3DI	GCAATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	38, 93
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	168, 527
BsiHKAI	GWGCWC	1 cut(s)	292
BslFI	GGGAC	2 cut(s)	48, 453
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	48, 453
BsnI	GGCC	2 cut(s)	168, 527
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	213, 266
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	2 cut(s)	168, 527
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	4 cut(s)	63, 64, 441, 442
BspPI	GGATC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	38, 93
BssMI	GATC	2 cut(s)	213, 266
BssNAI	GTATAC	1 cut(s)	354
Bst1107I	GTATAC	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	358, 457
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	3 cut(s)	259, 416, 571
BstDEI	CTNAG	2 cut(s)	399, 410
BstKTI	GATC	2 cut(s)	216, 269
BstMBI	GATC	2 cut(s)	213, 266
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 128, 137
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BstZ17I	GTATAC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	168, 527
BtgZI	GCGATG	2 cut(s)	155, 487
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	259, 416, 571
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	5 cut(s)	62, 91, 166, 440, 526
Csp6I	GTAC	4 cut(s)	384, 453, 542, 564
CviAII	CATG	2 cut(s)	95, 305
CviQI	GTAC	4 cut(s)	384, 453, 542, 564
DdeI	CTNAG	2 cut(s)	399, 410
DpnI	GATC	2 cut(s)	215, 268
DpnII	GATC	2 cut(s)	213, 266
Eco47I	GGWCC	3 cut(s)	62, 91, 440
EcoO109I	RGGNCCY	3 cut(s)	62, 440, 526
FaeI	CATG	2 cut(s)	98, 308
FaiI	YATR	9 cut(s)	46, 96, 306, 354, 371, 449, 509, 511, 513
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 254, 286
FaqI	GGGAC	2 cut(s)	48, 453
FatI	CATG	2 cut(s)	94, 304
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	168, 527
Hin1II	CATG	2 cut(s)	98, 308
HinfI	GANTC	2 cut(s)	310, 405
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	3 cut(s)	290, 354, 386
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	3 cut(s)	290, 354, 386
HpyCH4III	ACNGT	2 cut(s)	358, 457
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	7 cut(s)	23, 158, 257, 290, 365, 436, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 128, 137
HpyF3I	CTNAG	2 cut(s)	399, 410
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	98, 308
KflI	GGGWCCC	2 cut(s)	62, 440
Kzo9I	GATC	2 cut(s)	213, 266
LmnI	GCTCC	2 cut(s)	119, 139
LpnPI	CCDG	9 cut(s)	19, 20, 74, 150, 299, 414, 422, 428, 555
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	469
MalI	GATC	2 cut(s)	215, 268
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	2 cut(s)	213, 266
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	4 cut(s)	68, 159, 202, 548
MlyI	GAGTC	1 cut(s)	414
MnlI	CCTC	8 cut(s)	28, 121, 211, 215, 319, 337, 366, 539
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	119, 128, 137
NdeII	GATC	2 cut(s)	213, 266
NlaIII	CATG	2 cut(s)	98, 308
NlaIV	GGNNCC	4 cut(s)	63, 64, 441, 442
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	2 cut(s)	62, 440
Psp5II	RGGWCCY	2 cut(s)	62, 440
PspN4I	GGNNCC	4 cut(s)	63, 64, 441, 442
PspPI	GGNCC	5 cut(s)	62, 91, 166, 440, 526
PspPPI	RGGWCCY	2 cut(s)	62, 440
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	4 cut(s)	385, 454, 543, 565
RsaNI	GTAC	4 cut(s)	384, 453, 542, 564
RseI	CAYNNNNRTG	1 cut(s)	512
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	213, 266
Sau96I	GGNCC	5 cut(s)	62, 91, 166, 440, 526
SchI	GAGTC	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	7 cut(s)	20, 45, 115, 136, 154, 430, 472
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	3 cut(s)	62, 91, 440
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	68, 159, 202, 548
SsiI	CCGC	1 cut(s)	557
TaaI	ACNGT	2 cut(s)	358, 457
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	216
TasI	AATT	4 cut(s)	68, 159, 202, 548
TatI	WGTACW	3 cut(s)	383, 452, 563
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	17, 296
TspRI	CASTG	1 cut(s)	462
VneI	GTGCAC	1 cut(s)	288
VpaK11BI	GGWCC	3 cut(s)	62, 91, 440
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.