Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8321781.1

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 689

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8321781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

gggaatgaagatcttatcattgttcatgatgctcttgggtatggggagtgccgctcatcccttgcaataccaaactgtgggatttttgagaatataaattctctggacgagttagcacaaatgcctcaatggactaaagagaaacctttgcgttttattgctggcttcacctatttgggtcctaaatttatgaaagaaaatggattgaaccatgtgagtttttccacagctgatggagcacttgaggcagctcctgcggtaagaatattatggttgcatcagataattcaagtttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

99

Amino Acids

10.96

Weight (kDa)

5.18

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	2 cut(s)	52, 257
AcsI	RAATTY	2 cut(s)	97, 185
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	208, 290
AluBI	AGCT	2 cut(s)	230, 251
AluI	AGCT	2 cut(s)	230, 251
Alw21I	GWGCWC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	97, 185
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	2 cut(s)	52, 249
BlsI	GCNGC	2 cut(s)	53, 250
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	2 cut(s)	19, 286
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpuEI	CTTGAG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	2 cut(s)	52, 257
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	54
BssMI	GATC	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 245, 254
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	2 cut(s)	26, 212
CviJI	RGCY	3 cut(s)	165, 230, 251
CviKI_1	RGCY	3 cut(s)	165, 230, 251
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	179
FaeI	CATG	2 cut(s)	29, 215
FaiI	YATR	6 cut(s)	27, 42, 95, 191, 213, 271
FatI	CATG	2 cut(s)	25, 211
Fnu4HI	GCNGC	2 cut(s)	52, 249
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	52, 249
GluI	GCNGC	2 cut(s)	52, 249
Hin1II	CATG	2 cut(s)	29, 215
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	2 cut(s)	26, 104
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	65, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 245, 254
Hsp92II	CATG	2 cut(s)	29, 215
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	236, 256
LpnPI	CCDG	3 cut(s)	89, 147, 267
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	2 cut(s)	19, 286
MalI	GATC	1 cut(s)	12
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	97, 185, 285
MnlI	CCTC	2 cut(s)	135, 238
MspA1I	CMGCKG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	236, 245, 254
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	29, 215
NlaIV	GGNNCC	1 cut(s)	180
PagI	TCATGA	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	53, 250
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	230
SatI	GCNGC	2 cut(s)	52, 249
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	4 cut(s)	148, 173, 232, 253
SfaNI	GCATC	2 cut(s)	19, 286
SgeI	CNNG	9 cut(s)	38, 47, 74, 116, 121, 174, 224, 254, 266
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	97, 185, 285
SsiI	CCGC	2 cut(s)	52, 257
SspI	AATATT	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	3 cut(s)	97, 185, 285
TauI	GCSGC	1 cut(s)	54
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	14, 21, 206
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	2 cut(s)	97, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.