Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

14217480 .. 14219014

Gene Structure 1535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG096500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTTTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGCAGTTCTTGTTGCTAGCAAGAGATCCTTGCTCGGAAGGAAAAATTCACTAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

217

Amino Acids

23.61

Weight (kDa)

5.3

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	44 - 214	3.7e-30	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	617
AciI	CCGC	2 cut(s)	148, 268
AclWI	GGATC	2 cut(s)	61, 579
AcsI	RAATTY	4 cut(s)	206, 313, 401, 604
AcvI	CACGTG	1 cut(s)	623
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	293, 476
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	3 cut(s)	116, 128, 424
AluBI	AGCT	3 cut(s)	446, 467, 485
AluI	AGCT	3 cut(s)	446, 467, 485
Alw21I	GWGCWC	1 cut(s)	457
AlwI	GGATC	2 cut(s)	61, 579
AlwNI	CAGNNNCTG	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	41, 464
ApoI	RAATTY	4 cut(s)	206, 313, 401, 604
AspS9I	GGNCC	2 cut(s)	395, 499
AsuHPI	GGTGA	2 cut(s)	22, 376
AsuNHI	GCTAGC	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	395, 499
BbrPI	CACGTG	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	28, 476
BccI	CCATC	2 cut(s)	443, 469
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BfaI	CTAG	2 cut(s)	576, 611
BfmI	CTRYAG	1 cut(s)	135
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	3 cut(s)	42, 268, 465
BlsI	GCNGC	3 cut(s)	43, 269, 466
BmcAI	AGTACT	1 cut(s)	511
Bme18I	GGWCC	2 cut(s)	395, 499
BmgT120I	GGNCC	2 cut(s)	395, 499
BmiI	GGNNCC	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	3 cut(s)	53, 235, 634
BmtI	GCTAGC	1 cut(s)	579
BmuI	ACTGGG	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuEI	CTTGAG	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 476
Bse1I	ACTGG	2 cut(s)	382, 517
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	272, 649
BseLI	CCNNNNNNNGG	2 cut(s)	293, 476
BseNI	ACTGG	2 cut(s)	382, 517
BseXI	GCAGC	2 cut(s)	28, 476
Bsh1236I	CGCG	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	293, 476
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	66, 226, 584
BspACI	CCGC	2 cut(s)	148, 268
BspFNI	CGCG	1 cut(s)	617
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	396
BspOI	GCTAGC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	61, 579
BsrBI	CCGCTC	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	382, 517
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	66, 226, 584
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	3 cut(s)	109, 199, 293
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	272, 649
BstFNI	CGCG	1 cut(s)	617
BstKTI	GATC	3 cut(s)	69, 229, 587
BstMBI	GATC	3 cut(s)	66, 226, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 452, 461, 470
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	28, 476
BstX2I	RGATCY	3 cut(s)	66, 226, 584
BstYI	RGATCY	3 cut(s)	66, 226, 584
BtgZI	GCGATG	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	272, 649
Cac8I	GCNNGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	395, 499
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	510
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	3 cut(s)	48, 242, 428
CviJI	RGCY	4 cut(s)	381, 446, 467, 485
CviKI_1	RGCY	4 cut(s)	381, 446, 467, 485
CviQI	GTAC	1 cut(s)	510
DpnI	GATC	3 cut(s)	68, 228, 586
DpnII	GATC	3 cut(s)	66, 226, 584
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	395, 499
Eco72I	CACGTG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	3 cut(s)	51, 245, 431
FaiI	YATR	8 cut(s)	49, 91, 182, 243, 258, 311, 407, 429
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FatI	CATG	3 cut(s)	47, 241, 427
Fnu4HI	GCNGC	3 cut(s)	42, 268, 465
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	3 cut(s)	42, 268, 465
FspBI	CTAG	2 cut(s)	576, 611
GluI	GCNGC	3 cut(s)	42, 268, 465
HgaI	GACGC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	51, 245, 431
HinfI	GANTC	1 cut(s)	628
HphI	GGTGA	2 cut(s)	22, 376
Hpy188I	TCNGA	2 cut(s)	55, 596
Hpy188III	TCNNGA	3 cut(s)	242, 320, 632
HpyAV	CCTTC	1 cut(s)	591
HpyCH4III	ACNGT	3 cut(s)	109, 199, 293
HpyCH4IV	ACGT	2 cut(s)	19, 622
HpyCH4V	TGCA	3 cut(s)	44, 281, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 452, 461, 470
HpySE526I	ACGT	2 cut(s)	19, 622
Hsp92II	CATG	3 cut(s)	51, 245, 431
Kzo9I	GATC	3 cut(s)	66, 226, 584
LmnI	GCTCC	2 cut(s)	452, 472
LpnPI	CCDG	8 cut(s)	46, 147, 200, 305, 363, 483, 498, 545
Lsp1109I	GCAGC	2 cut(s)	28, 476
LweI	GCATC	3 cut(s)	53, 235, 634
MaeI	CTAG	2 cut(s)	576, 611
MaeII	ACGT	2 cut(s)	19, 622
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	3 cut(s)	68, 228, 586
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	3 cut(s)	66, 226, 584
MboII	GAAGA	2 cut(s)	3, 236
MflI	RGATCY	3 cut(s)	66, 226, 584
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	6 cut(s)	206, 313, 401, 543, 604, 649
MmeI	TCCRAC	2 cut(s)	33, 621
MnlI	CCTC	7 cut(s)	16, 19, 91, 351, 454, 510, 533
MspA1I	CMGCKG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	4 cut(s)	154, 452, 461, 470
NdeII	GATC	3 cut(s)	66, 226, 584
NheI	GCTAGC	1 cut(s)	575
NlaIII	CATG	3 cut(s)	51, 245, 431
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	15
PagI	TCATGA	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	628
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	43, 269, 466
PmaCI	CACGTG	1 cut(s)	623
PmlI	CACGTG	1 cut(s)	623
Ppu21I	YACGTR	1 cut(s)	623
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspCI	CACGTG	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	395, 499
PspPPI	RGGWCCY	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	66, 226, 584
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
SatI	GCNGC	3 cut(s)	42, 268, 465
Sau3AI	GATC	3 cut(s)	66, 226, 584
Sau96I	GGNCC	2 cut(s)	395, 499
ScaI	AGTACT	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	3 cut(s)	53, 235, 634
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	2 cut(s)	395, 499
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	6 cut(s)	206, 313, 401, 543, 604, 649
SsiI	CCGC	2 cut(s)	148, 268
SspMI	CTAG	2 cut(s)	576, 611
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	109, 199, 293
TaiI	ACGT	2 cut(s)	22, 625
TaqI	TCGA	1 cut(s)	633
TasI	AATT	6 cut(s)	206, 313, 401, 543, 604, 649
TatI	WGTACW	1 cut(s)	509
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	41, 464
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	230, 237, 422
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	395, 499
XapI	RAATTY	4 cut(s)	206, 313, 401, 604
XspI	CTAG	2 cut(s)	576, 611
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.