Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

5485559 .. 5557131

Gene Structure 71573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAACTTGATTGCTTCTCTGAATGGTAGAAGTTCTTCGATTCGTTTGGGTGTGATGCTTTCAATCGTTGTACTGATATTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCTATGGGAATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATTGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTGAGAGCGATCGGAGGCAGTGGGGTTCTATATTCCCCTTTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCGCAAAGCTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

224

Amino Acids

24.15

Weight (kDa)

8.8

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	30 - 116	3e-19	ATP phosphoribosyltransferase
HisG_C	PF08029	121 - 205	1.5e-11	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	3 cut(s)	72, 475, 564
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	63, 229, 317
AluBI	AGCT	5 cut(s)	134, 155, 173, 449, 664
AluI	AGCT	5 cut(s)	134, 155, 173, 449, 664
Alw21I	GWGCWC	3 cut(s)	145, 313, 409
Alw44I	GTGCAC	2 cut(s)	309, 405
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	546, 667
ApaLI	GTGCAC	2 cut(s)	309, 405
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	5 cut(s)	83, 112, 187, 461, 547
AvaII	GGWCC	4 cut(s)	83, 112, 187, 461
BaeGI	GKGCMC	2 cut(s)	313, 409
BarI	GAAGNNNNNNTAC	2 cut(s)	19, 51
Bbv12I	GWGCWC	3 cut(s)	145, 313, 409
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	4 cut(s)	131, 448, 488, 636
BisI	GCNGC	1 cut(s)	153
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	4 cut(s)	83, 112, 187, 461
BmgT120I	GGNCC	5 cut(s)	83, 112, 187, 461, 547
BmiI	GGNNCC	4 cut(s)	84, 85, 462, 463
BmsI	GCATC	2 cut(s)	45, 166
Bpu10I	CCTNAGC	1 cut(s)	431
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	411, 563
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	2 cut(s)	313, 409
BseXI	GCAGC	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	2 cut(s)	548, 669
BsiEI	CGRYCG	1 cut(s)	582
BsiHKAI	GWGCWC	3 cut(s)	145, 313, 409
BslFI	GGGAC	2 cut(s)	69, 474
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	69, 474
BsnI	GGCC	2 cut(s)	548, 669
Bsp1286I	GDGCHC	3 cut(s)	145, 313, 409
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	234, 287, 579
Bsp1720I	GCTNAGC	1 cut(s)	420
BspANI	GGCC	2 cut(s)	548, 669
BspCNI	CTCAG	2 cut(s)	412, 564
BspLI	GGNNCC	4 cut(s)	84, 85, 462, 463
BspPI	GGATC	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	3 cut(s)	234, 287, 579
BssNAI	GTATAC	1 cut(s)	375
Bst1107I	GTATAC	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	379, 478
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	280, 437
BstDEI	CTNAG	3 cut(s)	420, 431, 572
BstKTI	GATC	3 cut(s)	237, 290, 582
BstMBI	GATC	3 cut(s)	234, 287, 579
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 158
BstSLI	GKGCMC	2 cut(s)	313, 409
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BstZ17I	GTATAC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	548, 669
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	3 cut(s)	209, 483, 595
Cac8I	GCNNGC	2 cut(s)	280, 437
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr13I	GGNCC	5 cut(s)	83, 112, 187, 461, 547
Csp6I	GTAC	3 cut(s)	71, 474, 563
CviAII	CATG	2 cut(s)	116, 326
CviQI	GTAC	3 cut(s)	71, 474, 563
DdeI	CTNAG	3 cut(s)	420, 431, 572
DpnI	GATC	3 cut(s)	236, 289, 581
DpnII	GATC	3 cut(s)	234, 287, 579
Eco47I	GGWCC	4 cut(s)	83, 112, 187, 461
EcoO109I	RGGNCCY	3 cut(s)	83, 461, 547
FaeI	CATG	2 cut(s)	119, 329
FaiI	YATR	9 cut(s)	117, 164, 327, 375, 392, 470, 530, 532, 601
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 275, 307
FaqI	GGGAC	2 cut(s)	69, 474
FatI	CATG	2 cut(s)	115, 325
FauNDI	CATATG	1 cut(s)	530
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	548, 669
Hin1II	CATG	2 cut(s)	119, 329
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	3 cut(s)	40, 331, 426
Hpy166II	GTNNAC	4 cut(s)	311, 375, 407, 650
Hpy188I	TCNGA	2 cut(s)	21, 584
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	4 cut(s)	311, 375, 407, 650
HpyCH4III	ACNGT	2 cut(s)	379, 478
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	7 cut(s)	179, 278, 311, 386, 407, 457, 486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 158
HpyF3I	CTNAG	3 cut(s)	420, 431, 572
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	2 cut(s)	119, 329
KflI	GGGWCCC	2 cut(s)	83, 461
Kzo9I	GATC	3 cut(s)	234, 287, 579
LmnI	GCTCC	2 cut(s)	140, 160
LpnPI	CCDG	6 cut(s)	95, 171, 320, 435, 443, 449
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	2 cut(s)	45, 166
MaeII	ACGT	1 cut(s)	490
MalI	GATC	3 cut(s)	236, 289, 581
MboI	GATC	3 cut(s)	234, 287, 579
MboII	GAAGA	2 cut(s)	27, 641
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	3 cut(s)	145, 313, 409
MluCI	AATT	3 cut(s)	89, 180, 223
MlyI	GAGTC	1 cut(s)	435
MnlI	CCTC	8 cut(s)	142, 232, 236, 340, 358, 387, 560, 578
MroXI	GAANNNNTTC	1 cut(s)	34
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 158
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	3 cut(s)	234, 287, 579
NlaIII	CATG	2 cut(s)	119, 329
NlaIV	GGNNCC	4 cut(s)	84, 85, 462, 463
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	40, 331
PkrI	GCNGC	1 cut(s)	154
Ple19I	CGATCG	1 cut(s)	582
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PpuMI	RGGWCCY	2 cut(s)	83, 461
Psp5II	RGGWCCY	2 cut(s)	83, 461
PspN4I	GGNNCC	4 cut(s)	84, 85, 462, 463
PspPI	GGNCC	5 cut(s)	83, 112, 187, 461, 547
PspPPI	RGGWCCY	2 cut(s)	83, 461
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	3 cut(s)	72, 475, 564
RsaNI	GTAC	3 cut(s)	71, 474, 563
RseI	CAYNNNNRTG	1 cut(s)	533
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	3 cut(s)	234, 287, 579
Sau96I	GGNCC	5 cut(s)	83, 112, 187, 461, 547
SchI	GAGTC	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	145, 313, 409
SetI	ASST	7 cut(s)	136, 157, 175, 192, 451, 493, 666
SfaNI	GCATC	2 cut(s)	45, 166
SinI	GGWCC	4 cut(s)	83, 112, 187, 461
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	89, 180, 223
TaaI	ACNGT	2 cut(s)	379, 478
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	38, 237
TasI	AATT	3 cut(s)	89, 180, 223
TatI	WGTACW	3 cut(s)	70, 473, 562
TfiI	GAWTC	2 cut(s)	40, 331
TscAI	CASTG	3 cut(s)	216, 483, 595
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	17, 317, 642
TspRI	CASTG	3 cut(s)	216, 483, 595
VneI	GTGCAC	2 cut(s)	309, 405
VpaK11BI	GGWCC	4 cut(s)	83, 112, 187, 461
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.