Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

616510 .. 619188

Gene Structure 2679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCTCAATGGACTAAAGAGAAACCTCTCCGAGTTGCTACTGGCTTCACCTATCTCGGTCCTAAATTTATGAAAGATAATGGATTGAACCATGTGAGTTTTTCAACTGCTGATGGAGCACTCGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGACCTCGTGAGTAGTGGGACGACGCTGAAGGAAAACAACCTAAAAGAGATTGATGGAGGAGTTGTGTTACAAAGCCAGGCAGTTCTTGTTGCAAGCAAGAAGTCATTGATCCAAAGGAAAAGCGCCCTTGACACGACACATGAGATTCTTGAAAGATTAGAGGCACATCTAAGGGCTCAGGGTCAGTTCATGGTAACTGCAAATATGAGAGGAAATAGTGCAGCGGAAGTGGCTGAGCGCGTCTTGAGCCAGCCGTCATTATCTGGTTTACAGGGACCCACCATAAGTCCAGTTTTTTGCAAACGTGGTGGGCAAATTGCAGCCGATTACTATGCCATAGTCATATGTGTACCAAAAAAGGCACTCTACAATTCCGTTCAACAACTCAGAGCGGTTGGAGGTAGCGGAGTTCTAGTTTCCCCATTGACCTACATTTTTGATGAAGAAACACCAAGATGGCATGAACTTCTCACGAAGCTTGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

217

Amino Acids

23.28

Weight (kDa)

8.5

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	7 - 108	2.1e-24	ATP phosphoribosyltransferase
HisG_C	PF08029	113 - 197	1.3e-13	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	554
AccII	CGCG	1 cut(s)	402
AciI	CCGC	3 cut(s)	386, 554, 567
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	88, 105, 314, 542
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	131, 149, 640
AluI	AGCT	3 cut(s)	131, 149, 640
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	3 cut(s)	128, 383, 482
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	287, 402
AspS9I	GGNCC	3 cut(s)	59, 163, 437
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	3 cut(s)	59, 163, 437
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	140, 395, 494
BccI	CCATC	4 cut(s)	107, 133, 209, 612
BceAI	ACGGC	1 cut(s)	400
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	239
BfaI	CTAG	2 cut(s)	575, 649
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	3 cut(s)	129, 384, 483
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	3 cut(s)	130, 385, 484
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	3 cut(s)	59, 163, 437
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	59, 163, 437
BmiI	GGNNCC	2 cut(s)	438, 439
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	46, 452
BseBI	CCWGG	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	3 cut(s)	353, 387, 562
BseNI	ACTGG	2 cut(s)	46, 452
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	140, 395, 494
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	193, 450
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	193, 450
BsnI	GGCC	1 cut(s)	645
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	121, 340
Bsp143I	GATC	1 cut(s)	270
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	3 cut(s)	386, 554, 567
BspANI	GGCC	1 cut(s)	645
BspCNI	CTCAG	3 cut(s)	352, 388, 561
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	438, 439
BspPI	GGATC	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	46, 452
BssMI	GATC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	256, 413
BstDEI	CTNAG	4 cut(s)	332, 339, 396, 548
BstFNI	CGCG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	287, 402
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 125, 134, 392, 408
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	3 cut(s)	140, 395, 494
BsuRI	GGCC	1 cut(s)	645
BtgZI	GCGATG	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	256, 413
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	2 cut(s)	287, 402
Cfr13I	GGNCC	3 cut(s)	59, 163, 437
CseI	GACGC	2 cut(s)	193, 391
Csp6I	GTAC	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	4 cut(s)	92, 302, 352, 623
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	4 cut(s)	332, 339, 396, 548
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	3 cut(s)	59, 163, 437
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	4 cut(s)	95, 305, 355, 626
FaqI	GGGAC	2 cut(s)	193, 450
FatI	CATG	4 cut(s)	91, 301, 351, 622
FauNDI	CATATG	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	129, 384, 483
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	129, 384, 483
FspBI	CTAG	2 cut(s)	575, 649
GlaI	GCGC	2 cut(s)	286, 401
GluI	GCNGC	3 cut(s)	129, 384, 483
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	645
HgaI	GACGC	2 cut(s)	193, 391
HhaI	GCGC	2 cut(s)	287, 402
Hin1II	CATG	4 cut(s)	95, 305, 355, 626
Hin6I	GCGC	2 cut(s)	285, 400
HinP1I	GCGC	2 cut(s)	285, 400
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	1 cut(s)	307
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	431, 512
Hpy188I	TCNGA	2 cut(s)	32, 551
Hpy188III	TCNNGA	4 cut(s)	169, 311, 406, 634
Hpy8I	GTNNAC	2 cut(s)	431, 512
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	6 cut(s)	155, 254, 362, 383, 462, 482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 125, 134, 392, 408
HpyF3I	CTNAG	4 cut(s)	332, 339, 396, 548
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	4 cut(s)	95, 305, 355, 626
HspAI	GCGC	2 cut(s)	285, 400
KflI	GGGWCCC	1 cut(s)	437
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	116, 136
LpnPI	CCDG	9 cut(s)	27, 147, 224, 251, 326, 411, 419, 425, 465
Lsp1109I	GCAGC	3 cut(s)	140, 395, 494
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	575, 649
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	2 cut(s)	228, 355
MalI	GATC	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	554
MboI	GATC	1 cut(s)	270
MboII	GAAGA	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	121, 340
MluCI	AATT	4 cut(s)	65, 156, 477, 532
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	8 cut(s)	15, 36, 118, 176, 212, 316, 365, 554
MslI	CAYNNNNRTG	1 cut(s)	616
MspA1I	CMGCKG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	5 cut(s)	116, 125, 134, 392, 408
NdeI	CATATG	1 cut(s)	506
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	4 cut(s)	95, 305, 355, 626
NlaIV	GGNNCC	2 cut(s)	438, 439
PaeR7I	CTCGAG	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	130, 385, 484
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	438, 439
PspPI	GGNCC	3 cut(s)	59, 163, 437
PspPPI	RGGWCCY	1 cut(s)	437
PspXI	VCTCGAGB	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	616
SatI	GCNGC	3 cut(s)	129, 384, 483
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	3 cut(s)	59, 163, 437
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	121, 340
SfaNI	GCATC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	3 cut(s)	59, 163, 437
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	616
SmlI	CTYRAG	2 cut(s)	122, 406
SmoI	CTYRAG	2 cut(s)	122, 406
Sse9I	AATT	4 cut(s)	65, 156, 477, 532
SsiI	CCGC	3 cut(s)	386, 554, 567
SspMI	CTAG	2 cut(s)	575, 649
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	4 cut(s)	65, 156, 477, 532
TfiI	GAWTC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	128, 383, 482
TspDTI	ATGAA	4 cut(s)	86, 340, 618, 639
TspGWI	ACGGA	1 cut(s)	526
VpaK11BI	GGWCC	3 cut(s)	59, 163, 437
XapI	RAATTY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	122
XspI	CTAG	2 cut(s)	575, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.