Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

60726407 .. 60729927

Gene Structure 3521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCGCCGACACTCTCGATCTCCTCAAGGACTGCCAATTGTCTGTCAAGCATGTCAATCCTCGCCAGTACGTTGCTAAAATCCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAAGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGCGCCACTTATCCCTTGCATTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCAATGGGGATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTAAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCCTGCTCAAAATGGAAAGTGCATTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCGGTACATGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGATTGCAGGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGAAAATAAAAGCAGATTACTATGCCATCGTCATATATGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTTAGAGCGATTGGAGGCAGTCGGGTTCTATGTTCCCCTTTGACTTGCATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCTAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

282

Amino Acids

30.85

Weight (kDa)

6.33

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	88 - 174	6.9e-19	ATP phosphoribosyltransferase
HisG_C	PF08029	179 - 263	2.7e-10	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	456
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	4 cut(s)	71, 548, 649, 738
AfiI	CCNNNNNNNGG	2 cut(s)	253, 338
AgsI	TTSAA	3 cut(s)	116, 403, 491
AluBI	AGCT	5 cut(s)	91, 308, 329, 347, 623
AluI	AGCT	5 cut(s)	91, 308, 329, 347, 623
Alw21I	GWGCWC	2 cut(s)	319, 583
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	456
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	4 cut(s)	3, 119, 720, 841
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	6 cut(s)	160, 257, 286, 361, 635, 721
AsuC2I	CCSGG	1 cut(s)	187
AvaII	GGWCC	5 cut(s)	160, 257, 286, 361, 635
BaeGI	GKGCMC	1 cut(s)	583
Bbv12I	GWGCWC	2 cut(s)	319, 583
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	5 cut(s)	305, 622, 662, 704, 810
BcnI	CCSGG	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	238
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	6, 327
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	2 cut(s)	7, 328
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	5 cut(s)	160, 257, 286, 361, 635
BmgT120I	GGNCC	6 cut(s)	160, 257, 286, 361, 635, 721
BmiI	GGNNCC	4 cut(s)	258, 259, 636, 637
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	2 cut(s)	205, 340
Bpu10I	CCTNAGC	2 cut(s)	87, 605
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	11, 341
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 338
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	67, 288
Bse3DI	GCAATG	2 cut(s)	168, 342
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	253, 338
BseMI	GCAATG	2 cut(s)	168, 342
BseMII	CTCAG	2 cut(s)	78, 585
BseNI	ACTGG	2 cut(s)	67, 288
BseRI	GAGGAG	2 cut(s)	14, 432
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	4 cut(s)	5, 121, 722, 843
BsiHKAI	GWGCWC	2 cut(s)	319, 583
BsiSI	CCGG	2 cut(s)	174, 186
BslFI	GGGAC	2 cut(s)	243, 648
BslI	CCNNNNNNNGG	2 cut(s)	253, 338
BsmFI	GGGAC	2 cut(s)	243, 648
BsnI	GGCC	4 cut(s)	5, 121, 722, 843
Bsp1286I	GDGCHC	2 cut(s)	319, 583
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	4 cut(s)	19, 196, 408, 461
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	4 cut(s)	5, 121, 722, 843
BspCNI	CTCAG	2 cut(s)	79, 586
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	258, 259, 636, 637
BspPI	GGATC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	168, 342
BsrFI	RCCGGY	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	736
BsrI	ACTGG	2 cut(s)	67, 288
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	19, 196, 408, 461
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	454, 611
BstDEI	CTNAG	4 cut(s)	87, 594, 605, 746
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	22, 199, 411, 464
BstMBI	GATC	4 cut(s)	19, 196, 408, 461
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 323, 332
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	196, 461
BstYI	RGATCY	2 cut(s)	196, 461
BsuRI	GGCC	4 cut(s)	5, 121, 722, 843
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	454, 611
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	6 cut(s)	160, 257, 286, 361, 635, 721
Csp6I	GTAC	4 cut(s)	70, 547, 648, 737
CviAII	CATG	5 cut(s)	53, 212, 290, 500, 550
CviQI	GTAC	4 cut(s)	70, 547, 648, 737
DdeI	CTNAG	4 cut(s)	87, 594, 605, 746
DpnI	GATC	4 cut(s)	21, 198, 410, 463
DpnII	GATC	4 cut(s)	19, 196, 408, 461
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	121
Eco47I	GGWCC	5 cut(s)	160, 257, 286, 361, 635
EcoO109I	RGGNCCY	3 cut(s)	257, 635, 721
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	5 cut(s)	56, 215, 293, 503, 553
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	243, 648
FatI	CATG	5 cut(s)	52, 211, 289, 499, 549
Fnu4HI	GCNGC	2 cut(s)	6, 327
Fsp4HI	GCNGC	2 cut(s)	6, 327
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	2 cut(s)	6, 327
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	4 cut(s)	5, 121, 722, 843
HapII	CCGG	2 cut(s)	174, 186
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	56, 215, 293, 503, 553
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	505, 600
HpaII	CCGG	2 cut(s)	174, 186
Hpy166II	GTNNAC	2 cut(s)	581, 824
Hpy188III	TCNNGA	4 cut(s)	17, 179, 212, 509
Hpy8I	GTNNAC	2 cut(s)	581, 824
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	2 cut(s)	72, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 323, 332
HpyF3I	CTNAG	4 cut(s)	87, 594, 605, 746
HpySE526I	ACGT	2 cut(s)	72, 664
Hsp92II	CATG	5 cut(s)	56, 215, 293, 503, 553
HspAI	GCGC	1 cut(s)	235
KflI	GGGWCCC	2 cut(s)	257, 635
Kzo9I	GATC	4 cut(s)	19, 196, 408, 461
LmnI	GCTCC	3 cut(s)	232, 314, 334
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	205, 340
MaeII	ACGT	2 cut(s)	72, 664
MalI	GATC	4 cut(s)	21, 198, 410, 463
MboI	GATC	4 cut(s)	19, 196, 408, 461
MboII	GAAGA	2 cut(s)	206, 815
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	2 cut(s)	196, 461
MhlI	GDGCHC	2 cut(s)	319, 583
MluCI	AATT	5 cut(s)	38, 97, 263, 354, 397
MlyI	GAGTC	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	174, 186
MspR9I	CCNGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	314, 323, 332
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	4 cut(s)	19, 196, 408, 461
NlaIII	CATG	5 cut(s)	56, 215, 293, 503, 553
NlaIV	GGNNCC	4 cut(s)	258, 259, 636, 637
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	2 cut(s)	7, 328
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PpuMI	RGGWCCY	2 cut(s)	257, 635
Psp5II	RGGWCCY	2 cut(s)	257, 635
PspN4I	GGNNCC	4 cut(s)	258, 259, 636, 637
PspPI	GGNCC	6 cut(s)	160, 257, 286, 361, 635, 721
PspPPI	RGGWCCY	2 cut(s)	257, 635
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	196, 461
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	4 cut(s)	71, 548, 649, 738
RsaNI	GTAC	4 cut(s)	70, 547, 648, 737
RseI	CAYNNNNRTG	1 cut(s)	707
SatI	GCNGC	2 cut(s)	6, 327
Sau3AI	GATC	4 cut(s)	19, 196, 408, 461
Sau96I	GGNCC	6 cut(s)	160, 257, 286, 361, 635, 721
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	2 cut(s)	319, 583
SetI	ASST	9 cut(s)	75, 93, 165, 310, 331, 349, 366, 625, 667
SfaNI	GCATC	2 cut(s)	205, 340
SinI	GGWCC	5 cut(s)	160, 257, 286, 361, 635
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	2 cut(s)	26, 320
SmoI	CTYRAG	2 cut(s)	26, 320
Sse9I	AATT	5 cut(s)	38, 97, 263, 354, 397
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	2 cut(s)	75, 667
TaqI	TCGA	2 cut(s)	18, 411
TasI	AATT	5 cut(s)	38, 97, 263, 354, 397
TatI	WGTACW	2 cut(s)	647, 736
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	505
TscAI	CASTG	1 cut(s)	657
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	200, 816
TspRI	CASTG	1 cut(s)	657
VneI	GTGCAC	1 cut(s)	579
VpaK11BI	GGWCC	5 cut(s)	160, 257, 286, 361, 635
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.