Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

8825789 .. 8833612

Gene Structure 7824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTTGGCTGCAAACCCACCCAAACACCCCTTCTTTCTTACTCACTCCCTCCACCTCTCCTCCTCTCCCTCGCTGTCCTTCAAGATCACCTGTTCTGCGGCGACGGAGGAGAGGAGCGAGTTTCAGCTGGGACTGCCCAAAAAAGGCCGCATGACCGCAGACACTCTCGATCTCCTCAAGGACTGCCAGTTGCCCATCAAGCACATCAATCCTTGCCAGTACGTTGCTAAAATTCCTGAGCTGTCTAATTTGGAAGGGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTACCGGTCTTGACACCGTCAGTGAATATGGACGGAATTTGGAGGGGAAAAAAAAAAGCTATGTAATTGAGCCATCCCATATGCTGTCTAGTGTGTCGAAAACTTGCTTTTTGTATTTTTGTTGTCCTCCGGTCTTGAATATATGGAATGGGTGGTTGATTGGTTATAGGGTGTATAACTATGTATGCAATGGAAGTTTTTCTTTAAACCCAGAGAGCTATGTAATTGACACCAAAAGTATATCTATCCCATGTGCTTTGTACTGCTGTGCAAAGCTGTGCTTTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGGGAACATTAACTCACTGAATGAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATCTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGGCCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAACAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGACACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATTGTCATACGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTGAGAGCGGTGAGCCATCATCTTTCATTTAGTAATTTTCAATGTTATAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

439

Amino Acids

48.62

Weight (kDa)

8.62

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	207 - 347	1e-25	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccBSI	CCGCTC	1 cut(s)	1271
AccI	GTMKAC	1 cut(s)	1067
AciI	CCGC	4 cut(s)	98, 148, 156, 1271
AclWI	GGATC	1 cut(s)	975
AcsI	RAATTY	3 cut(s)	231, 355, 782
AfaI	GTAC	4 cut(s)	221, 581, 1168, 1257
AfiI	CCNNNNNNNGG	3 cut(s)	143, 674, 857
AflIII	ACRYGT	1 cut(s)	1225
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	7 cut(s)	82, 266, 457, 605, 922, 1010, 1304
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
Alw21I	GWGCWC	3 cut(s)	838, 1006, 1102
Alw26I	GTCTC	1 cut(s)	1034
Alw44I	GTGCAC	2 cut(s)	1002, 1098
AlwI	GGATC	1 cut(s)	975
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	4 cut(s)	145, 269, 880, 1239
ApaLI	GTGCAC	2 cut(s)	1002, 1098
ApeKI	GCWGC	2 cut(s)	8, 845
ApoI	RAATTY	3 cut(s)	231, 355, 782
AsiGI	ACCGGT	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	517
AspS9I	GGNCC	6 cut(s)	310, 776, 805, 880, 1154, 1240
AsuHPI	GGTGA	3 cut(s)	79, 757, 1285
AsuNHI	GCTAGC	1 cut(s)	709
AvaII	GGWCC	4 cut(s)	310, 776, 805, 1154
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	1006, 1102
Bbv12I	GWGCWC	3 cut(s)	838, 1006, 1102
BbvI	GCAGC	1 cut(s)	857
BccI	CCATC	8 cut(s)	203, 400, 816, 824, 850, 1141, 1181, 1287
BcoDI	GTCTC	1 cut(s)	1034
BfaI	CTAG	3 cut(s)	408, 710, 732
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	4 cut(s)	9, 99, 148, 846
BlpI	GCTNAGC	1 cut(s)	1113
BlsI	GCNGC	4 cut(s)	10, 100, 149, 847
Bme18I	GGWCC	4 cut(s)	310, 776, 805, 1154
BmgT120I	GGNCC	6 cut(s)	310, 776, 805, 880, 1154, 1240
BmiI	GGNNCC	4 cut(s)	777, 778, 1155, 1156
BmsI	GCATC	2 cut(s)	616, 859
BmtI	GCTAGC	1 cut(s)	713
Bpu10I	CCTNAGC	2 cut(s)	237, 1124
Bpu1102I	GCTNAGC	1 cut(s)	1113
BpuEI	CTTGAG	2 cut(s)	161, 860
BsaAI	YACGTR	1 cut(s)	1226
BsaJI	CCNNGG	1 cut(s)	313
BsaWI	WCCGGW	2 cut(s)	323, 448
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 927, 957
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 674, 857
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	4 cut(s)	187, 217, 763, 807
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	392
BseLI	CCNNNNNNNGG	3 cut(s)	143, 674, 857
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	4 cut(s)	228, 803, 1104, 1256
BseNI	ACTGG	4 cut(s)	187, 217, 763, 807
BseRI	GAGGAG	6 cut(s)	49, 52, 122, 127, 164, 951
BseSI	GKGCMC	2 cut(s)	1006, 1102
BseXI	GCAGC	1 cut(s)	857
BseYI	CCCAGC	1 cut(s)	127
BshFI	GGCC	4 cut(s)	147, 271, 882, 1241
BshTI	ACCGGT	1 cut(s)	323
BsiHKAI	GWGCWC	3 cut(s)	838, 1006, 1102
BsiSI	CCGG	2 cut(s)	324, 449
BslFI	GGGAC	3 cut(s)	144, 762, 1167
BslI	CCNNNNNNNGG	3 cut(s)	143, 674, 857
BsmAI	GTCTC	1 cut(s)	1034
BsmFI	GGGAC	3 cut(s)	144, 762, 1167
BsnI	GGCC	4 cut(s)	147, 271, 882, 1241
Bsp1286I	GDGCHC	3 cut(s)	838, 1006, 1102
Bsp1407I	TGTACA	1 cut(s)	1255
Bsp143I	GATC	5 cut(s)	84, 169, 607, 927, 980
Bsp1720I	GCTNAGC	1 cut(s)	1113
BspACI	CCGC	4 cut(s)	98, 148, 156, 1271
BspANI	GGCC	4 cut(s)	147, 271, 882, 1241
BspCNI	CTCAG	4 cut(s)	229, 804, 1105, 1257
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	4 cut(s)	777, 778, 1155, 1156
BspOI	GCTAGC	1 cut(s)	713
BspPI	GGATC	1 cut(s)	975
BsrBI	CCGCTC	1 cut(s)	1271
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	1255
BsrI	ACTGG	4 cut(s)	187, 217, 763, 807
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	5 cut(s)	84, 169, 607, 927, 980
BssNAI	GTATAC	1 cut(s)	1068
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	1068
Bst4CI	ACNGT	3 cut(s)	337, 1072, 1171
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstAUI	TGTACA	1 cut(s)	1255
BstBAI	YACGTR	1 cut(s)	1226
BstC8I	GCNNGC	2 cut(s)	711, 1130
BstDEI	CTNAG	6 cut(s)	237, 273, 812, 1113, 1124, 1265
BstF5I	GGATG	1 cut(s)	392
BstKTI	GATC	5 cut(s)	87, 172, 610, 930, 983
BstMAI	GTCTC	1 cut(s)	1034
BstMBI	GATC	5 cut(s)	84, 169, 607, 927, 980
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 199, 833, 842, 851
BstSLI	GKGCMC	2 cut(s)	1006, 1102
BstV1I	GCAGC	1 cut(s)	857
BstX2I	RGATCY	2 cut(s)	607, 980
BstYI	RGATCY	2 cut(s)	607, 980
BstZ17I	GTATAC	1 cut(s)	1068
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	4 cut(s)	147, 271, 882, 1241
BtgZI	GCGATG	1 cut(s)	869
BtsCI	GGATG	1 cut(s)	392
BtsIMutI	CAGTG	4 cut(s)	346, 698, 902, 1176
Cac8I	GCNNGC	2 cut(s)	711, 1130
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	6 cut(s)	310, 776, 805, 880, 1154, 1240
Csp6I	GTAC	4 cut(s)	220, 580, 1167, 1256
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	4 cut(s)	151, 570, 623, 1019
CviQI	GTAC	4 cut(s)	220, 580, 1167, 1256
DdeI	CTNAG	6 cut(s)	237, 273, 812, 1113, 1124, 1265
DpnI	GATC	5 cut(s)	86, 171, 609, 929, 982
DpnII	GATC	5 cut(s)	84, 169, 607, 927, 980
DraI	TTTAAA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	271
Eco47I	GGWCC	4 cut(s)	310, 776, 805, 1154
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	3 cut(s)	776, 1154, 1240
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	4 cut(s)	154, 573, 626, 1022
FalI	AAGNNNNNCTT	8 cut(s)	505, 537, 584, 616, 948, 980, 968, 1000
FaqI	GGGAC	3 cut(s)	144, 762, 1167
FatI	CATG	4 cut(s)	150, 569, 622, 1018
FauNDI	CATATG	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	1067
Fnu4HI	GCNGC	4 cut(s)	9, 99, 148, 846
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	4 cut(s)	9, 99, 148, 846
FspBI	CTAG	3 cut(s)	408, 710, 732
GluI	GCNGC	4 cut(s)	9, 99, 148, 846
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	147, 271, 882, 1241
HapII	CCGG	2 cut(s)	324, 449
Hin1II	CATG	4 cut(s)	154, 573, 626, 1022
HinfI	GANTC	2 cut(s)	1024, 1119
HpaII	CCGG	2 cut(s)	324, 449
HphI	GGTGA	3 cut(s)	79, 757, 1285
Hpy166II	GTNNAC	3 cut(s)	1004, 1068, 1100
Hpy188I	TCNGA	1 cut(s)	813
Hpy188III	TCNNGA	7 cut(s)	82, 167, 236, 329, 454, 623, 1028
Hpy8I	GTNNAC	3 cut(s)	1004, 1068, 1100
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	40, 88, 248
HpyCH4III	ACNGT	3 cut(s)	337, 1072, 1171
HpyCH4IV	ACGT	3 cut(s)	222, 1183, 1225
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 199, 833, 842, 851
HpyF3I	CTNAG	6 cut(s)	237, 273, 812, 1113, 1124, 1265
HpySE526I	ACGT	3 cut(s)	222, 1183, 1225
Hsp92II	CATG	4 cut(s)	154, 573, 626, 1022
KflI	GGGWCCC	2 cut(s)	776, 1154
Kzo9I	GATC	5 cut(s)	84, 169, 607, 927, 980
LmnI	GCTCC	3 cut(s)	114, 833, 853
Lsp1109I	GCAGC	1 cut(s)	857
LweI	GCATC	2 cut(s)	616, 859
MaeI	CTAG	3 cut(s)	408, 710, 732
MaeII	ACGT	3 cut(s)	222, 1183, 1225
MalI	GATC	5 cut(s)	86, 171, 609, 929, 982
MbiI	CCGCTC	1 cut(s)	1271
MboI	GATC	5 cut(s)	84, 169, 607, 927, 980
MboII	GAAGA	1 cut(s)	617
MflI	RGATCY	2 cut(s)	607, 980
MhlI	GDGCHC	3 cut(s)	838, 1006, 1102
MluCI	AATT	9 cut(s)	231, 247, 355, 384, 543, 782, 873, 916, 1297
MlyI	GAGTC	1 cut(s)	1128
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	2 cut(s)	524, 693
MslI	CAYNNNNRTG	1 cut(s)	1226
MspA1I	CMGCKG	2 cut(s)	127, 827
MspI	CCGG	2 cut(s)	324, 449
MwoI	GCNNNNNNNGC	5 cut(s)	133, 199, 833, 842, 851
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	5 cut(s)	84, 169, 607, 927, 980
NheI	GCTAGC	1 cut(s)	709
NlaIII	CATG	4 cut(s)	154, 573, 626, 1022
NlaIV	GGNNCC	4 cut(s)	777, 778, 1155, 1156
PagI	TCATGA	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	1024
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	674
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	10, 100, 149, 847
PleI	GAGTC	1 cut(s)	1127
PpsI	GAGTC	1 cut(s)	1127
Ppu21I	YACGTR	1 cut(s)	1226
PpuMI	RGGWCCY	2 cut(s)	776, 1154
Psp5II	RGGWCCY	2 cut(s)	776, 1154
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	4 cut(s)	777, 778, 1155, 1156
PspPI	GGNCC	6 cut(s)	310, 776, 805, 880, 1154, 1240
PspPPI	RGGWCCY	2 cut(s)	776, 1154
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	607, 980
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	2 cut(s)	127, 827
RsaI	GTAC	4 cut(s)	221, 581, 1168, 1257
RsaNI	GTAC	4 cut(s)	220, 580, 1167, 1256
RseI	CAYNNNNRTG	1 cut(s)	1226
SaqAI	TTAA	2 cut(s)	524, 693
SatI	GCNGC	4 cut(s)	9, 99, 148, 846
Sau3AI	GATC	5 cut(s)	84, 169, 607, 927, 980
Sau96I	GGNCC	6 cut(s)	310, 776, 805, 880, 1154, 1240
SchI	GAGTC	1 cut(s)	1128
SduI	GDGCHC	3 cut(s)	838, 1006, 1102
SfaNI	GCATC	2 cut(s)	616, 859
SinI	GGWCC	4 cut(s)	310, 776, 805, 1154
SmiMI	CAYNNNNRTG	1 cut(s)	1226
SmlI	CTYRAG	2 cut(s)	176, 839
SmoI	CTYRAG	2 cut(s)	176, 839
Sse9I	AATT	9 cut(s)	231, 247, 355, 384, 543, 782, 873, 916, 1297
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	4 cut(s)	98, 148, 156, 1271
SspMI	CTAG	3 cut(s)	408, 710, 732
StuI	AGGCCT	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	337, 1072, 1171
TaiI	ACGT	3 cut(s)	225, 1186, 1228
TaqI	TCGA	3 cut(s)	168, 416, 930
TasI	AATT	9 cut(s)	231, 247, 355, 384, 543, 782, 873, 916, 1297
TatI	WGTACW	3 cut(s)	579, 1166, 1255
TauI	GCSGC	2 cut(s)	101, 150
TfiI	GAWTC	1 cut(s)	1024
Tru1I	TTAA	2 cut(s)	524, 693
Tru9I	TTAA	2 cut(s)	524, 693
TscAI	CASTG	4 cut(s)	346, 705, 909, 1176
TseI	GCWGC	2 cut(s)	8, 845
TspDTI	ATGAA	3 cut(s)	611, 1010, 1278
TspGWI	ACGGA	2 cut(s)	119, 367
TspRI	CASTG	4 cut(s)	346, 705, 909, 1176
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	674
VneI	GTGCAC	2 cut(s)	1002, 1098
VpaK11BI	GGWCC	4 cut(s)	310, 776, 805, 1154
XapI	RAATTY	3 cut(s)	231, 355, 782
XmiI	GTMKAC	1 cut(s)	1067
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	3 cut(s)	408, 710, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.