Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

12014230 .. 12015797

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCCCTGTTTCCCACTGCTCGCTCGGTTCCCATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCGTCTGGGGCTGCCCGGCAAAGGCCGCATCGACGGTGACACTCGCAATTTCCTCAACAATTGTGAATTACCTGTTAAGCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGGTGCATATATCGTTCATACAAACTCACTCATTCGATCGATCACTATCATCAATAAACAACTTTCTTATGCAGCTTCTTGTTGCAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTTTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGCAGTTCTTGTTGCTAGCAAGAGATCCTTGCTCGGAAGGAAAAATTCACTAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

282

Amino Acids

31.04

Weight (kDa)

6.12

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	109 - 279	8.4e-30	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	465
AccII	CGCG	1 cut(s)	812
AciI	CCGC	3 cut(s)	127, 343, 463
AclWI	GGATC	2 cut(s)	94, 774
AcsI	RAATTY	4 cut(s)	401, 508, 596, 799
AcvI	CACGTG	1 cut(s)	818
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	3 cut(s)	122, 488, 671
AflIII	ACRYGT	1 cut(s)	815
AgsI	TTSAA	3 cut(s)	311, 323, 619
AluBI	AGCT	4 cut(s)	292, 641, 662, 680
AluI	AGCT	4 cut(s)	292, 641, 662, 680
Alw21I	GWGCWC	1 cut(s)	652
AlwI	GGATC	2 cut(s)	94, 774
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	74, 112, 289, 659
ApoI	RAATTY	4 cut(s)	401, 508, 596, 799
AspS9I	GGNCC	2 cut(s)	590, 694
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	55, 149, 571
AsuNHI	GCTAGC	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	590, 694
BbrPI	CACGTG	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	4 cut(s)	61, 99, 301, 671
BccI	CCATC	2 cut(s)	638, 664
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcnI	CCSGG	1 cut(s)	117
BfaI	CTAG	2 cut(s)	771, 806
BfmI	CTRYAG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
BlsI	GCNGC	6 cut(s)	76, 114, 128, 291, 464, 661
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	590, 694
BmgT120I	GGNCC	2 cut(s)	590, 694
BmiI	GGNNCC	2 cut(s)	30, 591
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	4 cut(s)	86, 138, 430, 829
BmtI	GCTAGC	1 cut(s)	774
BmuI	ACTGGG	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	818
BsaBI	GATNNNNATC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 488, 671
Bse1I	ACTGG	2 cut(s)	577, 712
Bse8I	GATNNNNATC	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	467, 844
BseJI	GATNNNNATC	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	122, 488, 671
BseNI	ACTGG	2 cut(s)	577, 712
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	4 cut(s)	61, 99, 301, 671
Bsh1236I	CGCG	1 cut(s)	812
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	3 cut(s)	122, 488, 671
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	5 cut(s)	99, 253, 257, 421, 779
BspACI	CCGC	3 cut(s)	127, 343, 463
BspANI	GGCC	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	30, 591
BspOI	GCTAGC	1 cut(s)	774
BspPI	GGATC	2 cut(s)	94, 774
BsrBI	CCGCTC	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	577, 712
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	5 cut(s)	99, 253, 257, 421, 779
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	3 cut(s)	137, 394, 488
Bst6I	CTCTTC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	22, 772
BstF5I	GGATG	2 cut(s)	467, 844
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	5 cut(s)	102, 256, 260, 424, 782
BstMBI	GATC	5 cut(s)	99, 253, 257, 421, 779
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 349, 647, 656, 665
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	4 cut(s)	61, 99, 301, 671
BstX2I	RGATCY	3 cut(s)	99, 421, 779
BstYI	RGATCY	3 cut(s)	99, 421, 779
Bsu15I	ATCGAT	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	683
BtsCI	GGATG	2 cut(s)	467, 844
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	22, 772
CaiI	CAGNNNCTG	1 cut(s)	665
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	590, 694
ClaI	ATCGAT	1 cut(s)	256
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	4 cut(s)	34, 81, 437, 623
CviJI	RGCY	7 cut(s)	112, 126, 292, 576, 641, 662, 680
CviKI_1	RGCY	7 cut(s)	112, 126, 292, 576, 641, 662, 680
CviQI	GTAC	1 cut(s)	705
DpnI	GATC	5 cut(s)	101, 255, 259, 423, 781
DpnII	GATC	5 cut(s)	99, 253, 257, 421, 779
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	590, 694
Eco72I	CACGTG	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	37, 84, 440, 626
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	4 cut(s)	33, 80, 436, 622
Fnu4HI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
FspBI	CTAG	2 cut(s)	771, 806
GluI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	818
Hin1II	CATG	4 cut(s)	37, 84, 440, 626
HinfI	GANTC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	3 cut(s)	55, 149, 571
Hpy188I	TCNGA	2 cut(s)	88, 791
Hpy188III	TCNNGA	3 cut(s)	437, 515, 827
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	786
HpyCH4III	ACNGT	3 cut(s)	137, 394, 488
HpyCH4IV	ACGT	2 cut(s)	52, 817
HpyCH4V	TGCA	6 cut(s)	77, 223, 289, 302, 476, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 349, 647, 656, 665
HpySE526I	ACGT	2 cut(s)	52, 817
Hsp92II	CATG	4 cut(s)	37, 84, 440, 626
Kzo9I	GATC	5 cut(s)	99, 253, 257, 421, 779
LmnI	GCTCC	2 cut(s)	647, 667
Lsp1109I	GCAGC	4 cut(s)	61, 99, 301, 671
LweI	GCATC	4 cut(s)	86, 138, 430, 829
MaeI	CTAG	2 cut(s)	771, 806
MaeII	ACGT	2 cut(s)	52, 817
MaeIII	GTNAC	2 cut(s)	48, 137
MalI	GATC	5 cut(s)	101, 255, 259, 423, 781
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	5 cut(s)	99, 253, 257, 421, 779
MboII	GAAGA	2 cut(s)	36, 431
MfeI	CAATTG	1 cut(s)	160
MflI	RGATCY	3 cut(s)	99, 421, 779
MhlI	GDGCHC	1 cut(s)	652
MluCI	AATT	9 cut(s)	148, 160, 167, 401, 508, 596, 738, 799, 844
MmeI	TCCRAC	2 cut(s)	66, 816
MnlI	CCTC	8 cut(s)	49, 52, 164, 201, 546, 649, 705, 728
MseI	TTAA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	5 cut(s)	126, 349, 647, 656, 665
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	99, 253, 257, 421, 779
NheI	GCTAGC	1 cut(s)	770
NlaIII	CATG	4 cut(s)	37, 84, 440, 626
NlaIV	GGNNCC	2 cut(s)	30, 591
NmuCI	GTSAC	2 cut(s)	48, 137
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	823
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	6 cut(s)	76, 114, 128, 291, 464, 661
Ple19I	CGATCG	1 cut(s)	256
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
Ppu21I	YACGTR	1 cut(s)	818
PpuMI	RGGWCCY	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	590
PspCI	CACGTG	1 cut(s)	818
PspN4I	GGNNCC	2 cut(s)	30, 591
PspPI	GGNCC	2 cut(s)	590, 694
PspPPI	RGGWCCY	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	3 cut(s)	99, 421, 779
PvuI	CGATCG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
Sau3AI	GATC	5 cut(s)	99, 253, 257, 421, 779
Sau96I	GGNCC	2 cut(s)	590, 694
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	652
SfaNI	GCATC	4 cut(s)	86, 138, 430, 829
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	590, 694
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	9 cut(s)	148, 160, 167, 401, 508, 596, 738, 799, 844
SsiI	CCGC	3 cut(s)	127, 343, 463
SspMI	CTAG	2 cut(s)	771, 806
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	137, 394, 488
TaiI	ACGT	2 cut(s)	55, 820
TaqI	TCGA	4 cut(s)	132, 252, 256, 828
TasI	AATT	9 cut(s)	148, 160, 167, 401, 508, 596, 738, 799, 844
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	2 cut(s)	129, 465
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	48, 137
TseI	GCWGC	4 cut(s)	74, 112, 289, 659
Tsp45I	GTSAC	2 cut(s)	48, 137
TspDTI	ATGAA	4 cut(s)	223, 425, 432, 617
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	22
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	590, 694
XapI	RAATTY	4 cut(s)	401, 508, 596, 799
XspI	CTAG	2 cut(s)	771, 806
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.