Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005177.1

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

71964 .. 72829

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005177.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgtttgatgatgcaattttggaccttgtgagtagtgggataacactgaaagaaaacaatctgaaagagatcgagggaggagtcgtgttgcaaagtcaagcagttcttgttgcaagcaagagatccttgctcaaaatgaaaagtgcacttgaaacgacacatgagattctggaaagattggaggcgcatctaaaggcagagggtcagtatacggtggttgcaaatgtgaggggaaatagtgcacaagaagtggctgagcgagtccttagccagccatcattagctggtttgcagggacccactgtaagtacagtgtattgcaaacgtgatgggcaaataaaagcagattactatgccatcgtcatatgtgtgccaaaaaaggccctctacaagtctgtacaacaattgagagcggtgagccatgatctttcatttagtaattttcaatgttatagaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

153

Amino Acids

16.83

Weight (kDa)

8.41

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	310, 399
AgsI	TTSAA	2 cut(s)	152, 446
AluBI	AGCT	2 cut(s)	284, 459
AluI	AGCT	2 cut(s)	284, 459
Alw21I	GWGCWC	2 cut(s)	148, 244
Alw44I	GTGCAC	2 cut(s)	144, 240
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	381
ApaLI	GTGCAC	2 cut(s)	144, 240
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	22, 296, 382
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	2 cut(s)	22, 296
BaeGI	GKGCMC	2 cut(s)	148, 244
Bbv12I	GWGCWC	2 cut(s)	148, 244
BccI	CCATC	3 cut(s)	283, 323, 365
BlpI	GCTNAGC	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	22, 296
BmgT120I	GGNCC	3 cut(s)	22, 296, 382
BmiI	GGNNCC	2 cut(s)	297, 298
BmsI	GCATC	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	2 cut(s)	148, 244
BshFI	GGCC	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	148, 244
BslFI	GGGAC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	148, 244
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	69, 122, 424
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	297, 298
BspPI	GGATC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	413
BsrGI	TGTACA	1 cut(s)	397
BssMI	GATC	3 cut(s)	69, 122, 424
BssNAI	GTATAC	1 cut(s)	210
Bst1107I	GTATAC	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	214, 304, 313
BstAUI	TGTACA	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	115, 272
BstDEI	CTNAG	2 cut(s)	255, 266
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	72, 125, 427
BstMBI	GATC	3 cut(s)	69, 122, 424
BstSLI	GKGCMC	2 cut(s)	148, 244
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BstZ17I	GTATAC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	383
BtsIMutI	CAGTG	3 cut(s)	44, 300, 318
Cac8I	GCNNGC	2 cut(s)	115, 272
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	22, 296, 382
Csp6I	GTAC	2 cut(s)	309, 398
CviAII	CATG	2 cut(s)	161, 422
CviJI	RGCY	7 cut(s)	254, 270, 274, 284, 383, 420, 459
CviKI_1	RGCY	7 cut(s)	254, 270, 274, 284, 383, 420, 459
CviQI	GTAC	2 cut(s)	309, 398
DdeI	CTNAG	2 cut(s)	255, 266
DpnI	GATC	3 cut(s)	71, 124, 426
DpnII	GATC	3 cut(s)	69, 122, 424
Eco47I	GGWCC	2 cut(s)	22, 296
EcoO109I	RGGNCCY	2 cut(s)	296, 382
FaeI	CATG	2 cut(s)	164, 425
FaiI	YATR	7 cut(s)	162, 210, 354, 365, 367, 423, 453
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 110, 142
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	2 cut(s)	160, 421
FauNDI	CATATG	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	209
GlaI	GCGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	164, 425
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	3 cut(s)	81, 166, 261
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	3 cut(s)	146, 210, 242
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	3 cut(s)	146, 210, 242
HpyCH4III	ACNGT	3 cut(s)	214, 304, 313
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	8 cut(s)	14, 91, 113, 146, 221, 242, 292, 321
HpyF3I	CTNAG	2 cut(s)	255, 266
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	164, 425
HspAI	GCGC	1 cut(s)	185
KflI	GGGWCCC	1 cut(s)	296
Kzo9I	GATC	3 cut(s)	69, 122, 424
LpnPI	CCDG	4 cut(s)	155, 270, 278, 284
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	325
MalI	GATC	3 cut(s)	71, 124, 426
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	69, 122, 424
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	148, 244
MluCI	AATT	3 cut(s)	15, 404, 439
MlyI	GAGTC	2 cut(s)	90, 270
MnlI	CCTC	6 cut(s)	67, 71, 175, 193, 222, 395
MslI	CAYNNNNRTG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	404
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	3 cut(s)	69, 122, 424
NlaIII	CATG	2 cut(s)	164, 425
NlaIV	GGNNCC	2 cut(s)	297, 298
PfeI	GAWTC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	89, 269
PpsI	GAGTC	2 cut(s)	89, 269
PpuMI	RGGWCCY	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	297, 298
PspPI	GGNCC	3 cut(s)	22, 296, 382
PspPPI	RGGWCCY	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	2 cut(s)	310, 399
RsaNI	GTAC	2 cut(s)	309, 398
RseI	CAYNNNNRTG	1 cut(s)	368
Sau3AI	GATC	3 cut(s)	69, 122, 424
Sau96I	GGNCC	3 cut(s)	22, 296, 382
SchI	GAGTC	2 cut(s)	90, 270
SduI	GDGCHC	2 cut(s)	148, 244
SetI	ASST	4 cut(s)	27, 286, 328, 461
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	2 cut(s)	22, 296
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	15, 404, 439
SsiI	CCGC	1 cut(s)	413
TaaI	ACNGT	3 cut(s)	214, 304, 313
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	15, 404, 439
TatI	WGTACW	2 cut(s)	308, 397
TfiI	GAWTC	1 cut(s)	166
TscAI	CASTG	3 cut(s)	51, 307, 318
TspDTI	ATGAA	2 cut(s)	152, 420
TspRI	CASTG	3 cut(s)	51, 307, 318
VneI	GTGCAC	2 cut(s)	144, 240
VpaK11BI	GGWCC	2 cut(s)	22, 296
XmiI	GTMKAC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.