Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

61366883 .. 61370773

Gene Structure 3891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTTGGCGGCAAACCCACCCAAACGCCCCTTCTTTCTCACTCACTCCCTCCCCCTCTCCTCCTCTCCCTTGCCGTCACTCTCCTTCAAAATCACCTGCTCTGCGGCGGCGGGGGCGGAGGAGAGGAGCGAGATTCGGCTGGGACTGCCCAGCAAAGGCCGCATGGCCGCCGACACTCTCGATCTCCTCAAGGACTGCCAATTGTCCGTCAAGCACGTCAATCCTCGCCAGTACGTTGCTAAAATCCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGCTGCTGTCTGGGGATTTGGACCTCGGCATTGCTGGTCTTGACACCGTCAGTGAATATGGACGGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGTTTTGGGGAGTGCCACTTATCCCTTGCAATTCCAAAATATGGGATTTTTGAGAACATTAATTCACTGAATGAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCAAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGACTGGAGGCGCATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCCAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAGAGCAGATTACTACGCCATCGTCATATGTGTGCCAAAAAAGGCCCTCTACAAATCTGTACAACAACTGAGAGCGATCGGAGGCAGTGGGGTTTTATATTCCCCTTTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCAAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

379

Amino Acids

41.27

Weight (kDa)

7.05

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	94 - 270	4.4e-37	ATP phosphoribosyltransferase
HisG_C	PF08029	275 - 359	5.3e-11	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	836
AciI	CCGC	7 cut(s)	8, 104, 107, 110, 116, 160, 168
AclWI	GGATC	1 cut(s)	744
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	3 cut(s)	233, 937, 1026
AfiI	CCNNNNNNNGG	4 cut(s)	155, 443, 626, 855
AgsI	TTSAA	4 cut(s)	88, 278, 691, 779
AjiI	CACGTC	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	7 cut(s)	253, 304, 478, 596, 617, 635, 911
AluI	AGCT	7 cut(s)	253, 304, 478, 596, 617, 635, 911
Alw21I	GWGCWC	3 cut(s)	607, 775, 871
Alw44I	GTGCAC	2 cut(s)	771, 867
AlwI	GGATC	1 cut(s)	744
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	5 cut(s)	157, 165, 281, 1008, 1129
ApaLI	GTGCAC	2 cut(s)	771, 867
ApeKI	GCWGC	2 cut(s)	304, 614
ApoI	RAATTY	1 cut(s)	551
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	6 cut(s)	322, 545, 574, 649, 923, 1009
AsuHPI	GGTGA	2 cut(s)	85, 526
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	5 cut(s)	322, 545, 574, 649, 923
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	2 cut(s)	775, 871
Bbv12I	GWGCWC	3 cut(s)	607, 775, 871
BbvI	GCAGC	2 cut(s)	291, 626
BccI	CCATC	6 cut(s)	593, 619, 910, 950, 992, 1098
BceAI	ACGGC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	479, 501
BfuAI	ACCTGC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	7 cut(s)	9, 105, 108, 160, 168, 305, 615
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	7 cut(s)	10, 106, 109, 161, 169, 306, 616
Bme18I	GGWCC	5 cut(s)	322, 545, 574, 649, 923
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	6 cut(s)	322, 545, 574, 649, 923, 1009
BmiI	GGNNCC	4 cut(s)	546, 547, 924, 925
BmsI	GCATC	3 cut(s)	385, 628, 823
BmtI	GCTAGC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	827
Bpu10I	CCTNAGC	2 cut(s)	249, 893
Bpu1102I	GCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	173, 629
BsaJI	CCNNGG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 443, 626, 855
Bse1I	ACTGG	4 cut(s)	229, 532, 576, 810
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	4 cut(s)	155, 443, 626, 855
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	3 cut(s)	240, 873, 1025
BseNI	ACTGG	4 cut(s)	229, 532, 576, 810
BseRI	GAGGAG	6 cut(s)	49, 52, 134, 139, 176, 720
BseSI	GKGCMC	2 cut(s)	775, 871
BseXI	GCAGC	2 cut(s)	291, 626
BseYI	CCCAGC	2 cut(s)	139, 149
Bsh1285I	CGRYCG	1 cut(s)	1044
BshFI	GGCC	5 cut(s)	159, 167, 283, 1010, 1131
BsiEI	CGRYCG	1 cut(s)	1044
BsiHKAI	GWGCWC	3 cut(s)	607, 775, 871
BslFI	GGGAC	3 cut(s)	156, 531, 936
BslI	CCNNNNNNNGG	4 cut(s)	155, 443, 626, 855
BsmFI	GGGAC	3 cut(s)	156, 531, 936
BsnI	GGCC	5 cut(s)	159, 167, 283, 1010, 1131
Bsp1286I	GDGCHC	3 cut(s)	607, 775, 871
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp143I	GATC	5 cut(s)	181, 376, 696, 749, 1041
Bsp1720I	GCTNAGC	1 cut(s)	882
BspACI	CCGC	7 cut(s)	8, 104, 107, 110, 116, 160, 168
BspANI	GGCC	5 cut(s)	159, 167, 283, 1010, 1131
BspCNI	CTCAG	3 cut(s)	241, 874, 1026
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	4 cut(s)	546, 547, 924, 925
BspMI	ACCTGC	1 cut(s)	104
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	4 cut(s)	229, 532, 576, 810
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	5 cut(s)	181, 376, 696, 749, 1041
BssNAI	GTATAC	1 cut(s)	837
Bst1107I	GTATAC	1 cut(s)	837
Bst4CI	ACNGT	3 cut(s)	349, 841, 940
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstAUI	TGTACA	1 cut(s)	1024
BstC8I	GCNNGC	3 cut(s)	480, 742, 899
BstDEI	CTNAG	5 cut(s)	249, 285, 882, 893, 1034
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	5 cut(s)	184, 379, 699, 752, 1044
BstMBI	GATC	5 cut(s)	181, 376, 696, 749, 1041
BstMCI	CGRYCG	1 cut(s)	1044
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 145, 159, 602, 611, 620
BstSLI	GKGCMC	2 cut(s)	775, 871
BstV1I	GCAGC	2 cut(s)	291, 626
BstX2I	RGATCY	2 cut(s)	376, 749
BstYI	RGATCY	2 cut(s)	376, 749
BstZ17I	GTATAC	1 cut(s)	837
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	159, 167, 283, 1010, 1131
BtgZI	GCGATG	1 cut(s)	638
BtrI	CACGTC	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	5 cut(s)	358, 467, 671, 945, 1057
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	480, 742, 899
CaiI	CAGNNNCTG	1 cut(s)	620
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	814
Cfr13I	GGNCC	6 cut(s)	322, 545, 574, 649, 923, 1009
Csp6I	GTAC	3 cut(s)	232, 936, 1025
CviAII	CATG	4 cut(s)	163, 392, 578, 788
CviQI	GTAC	3 cut(s)	232, 936, 1025
DdeI	CTNAG	5 cut(s)	249, 285, 882, 893, 1034
DpnI	GATC	5 cut(s)	183, 378, 698, 751, 1043
DpnII	GATC	5 cut(s)	181, 376, 696, 749, 1041
EaeI	YGGCCR	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	131
Eco147I	AGGCCT	1 cut(s)	283
Eco47I	GGWCC	5 cut(s)	322, 545, 574, 649, 923
Eco81I	CCTNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	3 cut(s)	545, 923, 1009
FaeI	CATG	4 cut(s)	166, 395, 581, 791
FalI	AAGNNNNNCTT	4 cut(s)	717, 749, 737, 769
FaqI	GGGAC	3 cut(s)	156, 531, 936
FatI	CATG	4 cut(s)	162, 391, 577, 787
FauI	CCCGC	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	992
FblI	GTMKAC	1 cut(s)	836
Fnu4HI	GCNGC	7 cut(s)	9, 105, 108, 160, 168, 305, 615
Fsp4HI	GCNGC	7 cut(s)	9, 105, 108, 160, 168, 305, 615
FspBI	CTAG	2 cut(s)	479, 501
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	7 cut(s)	9, 105, 108, 160, 168, 305, 615
GsaI	CCCAGC	2 cut(s)	143, 153
GsuI	CTGGAG	1 cut(s)	827
HaeIII	GGCC	5 cut(s)	159, 167, 283, 1010, 1131
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	4 cut(s)	166, 395, 581, 791
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HinfI	GANTC	3 cut(s)	133, 793, 888
HphI	GGTGA	2 cut(s)	85, 526
Hpy166II	GTNNAC	4 cut(s)	773, 837, 869, 1112
Hpy188I	TCNGA	1 cut(s)	1046
Hpy188III	TCNNGA	4 cut(s)	179, 341, 392, 797
Hpy8I	GTNNAC	4 cut(s)	773, 837, 869, 1112
HpyAV	CCTTC	2 cut(s)	40, 94
HpyCH4III	ACNGT	3 cut(s)	349, 841, 940
HpyCH4IV	ACGT	3 cut(s)	216, 234, 952
HpyCH4V	TGCA	8 cut(s)	431, 641, 718, 740, 773, 869, 919, 948
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 145, 159, 602, 611, 620
HpyF3I	CTNAG	5 cut(s)	249, 285, 882, 893, 1034
HpySE526I	ACGT	3 cut(s)	216, 234, 952
Hsp92II	CATG	4 cut(s)	166, 395, 581, 791
HspAI	GCGC	1 cut(s)	812
KflI	GGGWCCC	2 cut(s)	545, 923
Kzo9I	GATC	5 cut(s)	181, 376, 696, 749, 1041
LmnI	GCTCC	3 cut(s)	126, 602, 622
Lsp1109I	GCAGC	2 cut(s)	291, 626
LweI	GCATC	3 cut(s)	385, 628, 823
MaeI	CTAG	2 cut(s)	479, 501
MaeII	ACGT	3 cut(s)	216, 234, 952
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	5 cut(s)	183, 378, 698, 751, 1043
MboI	GATC	5 cut(s)	181, 376, 696, 749, 1041
MboII	GAAGA	2 cut(s)	386, 1103
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	2 cut(s)	376, 749
MhlI	GDGCHC	3 cut(s)	607, 775, 871
MluCI	AATT	7 cut(s)	200, 259, 432, 463, 551, 642, 685
MlyI	GAGTC	1 cut(s)	897
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	6 cut(s)	113, 145, 159, 602, 611, 620
NdeI	CATATG	1 cut(s)	992
NdeII	GATC	5 cut(s)	181, 376, 696, 749, 1041
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	166, 395, 581, 791
NlaIV	GGNNCC	4 cut(s)	546, 547, 924, 925
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	75
PagI	TCATGA	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	133, 793
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	7 cut(s)	10, 106, 109, 161, 169, 306, 616
Ple19I	CGATCG	1 cut(s)	1044
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PpuMI	RGGWCCY	2 cut(s)	545, 923
PshBI	ATTAAT	1 cut(s)	462
Psp5II	RGGWCCY	2 cut(s)	545, 923
PspFI	CCCAGC	2 cut(s)	139, 149
PspN4I	GGNNCC	4 cut(s)	546, 547, 924, 925
PspPI	GGNCC	6 cut(s)	322, 545, 574, 649, 923, 1009
PspPPI	RGGWCCY	2 cut(s)	545, 923
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	376, 749
PsyI	GACNNNGTC	1 cut(s)	347
PvuI	CGATCG	1 cut(s)	1044
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	3 cut(s)	233, 937, 1026
RsaNI	GTAC	3 cut(s)	232, 936, 1025
RseI	CAYNNNNRTG	1 cut(s)	995
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	7 cut(s)	9, 105, 108, 160, 168, 305, 615
Sau3AI	GATC	5 cut(s)	181, 376, 696, 749, 1041
Sau96I	GGNCC	6 cut(s)	322, 545, 574, 649, 923, 1009
SchI	GAGTC	1 cut(s)	897
SduI	GDGCHC	3 cut(s)	607, 775, 871
SfaNI	GCATC	3 cut(s)	385, 628, 823
SinI	GGWCC	5 cut(s)	322, 545, 574, 649, 923
SmiMI	CAYNNNNRTG	1 cut(s)	995
SmlI	CTYRAG	2 cut(s)	188, 608
SmoI	CTYRAG	2 cut(s)	188, 608
Sse9I	AATT	7 cut(s)	200, 259, 432, 463, 551, 642, 685
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	7 cut(s)	8, 104, 107, 110, 116, 160, 168
SspMI	CTAG	2 cut(s)	479, 501
StuI	AGGCCT	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	349, 841, 940
TaiI	ACGT	3 cut(s)	219, 237, 955
TaqI	TCGA	2 cut(s)	180, 699
TasI	AATT	7 cut(s)	200, 259, 432, 463, 551, 642, 685
TatI	WGTACW	2 cut(s)	935, 1024
TauI	GCSGC	5 cut(s)	11, 107, 110, 162, 170
TfiI	GAWTC	2 cut(s)	133, 793
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	5 cut(s)	358, 474, 678, 945, 1057
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	2 cut(s)	304, 614
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	380, 779, 1104
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	5 cut(s)	358, 474, 678, 945, 1057
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	443
VneI	GTGCAC	2 cut(s)	771, 867
VpaK11BI	GGWCC	5 cut(s)	322, 545, 574, 649, 923
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	836
XspI	CTAG	2 cut(s)	479, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.