Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

60804850 .. 60809271

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCTCCTTCTTTCTTACTCACTCCCTCCCCCCCTCCTCCTCTCCCTCGCCGTCACTGTCGTTCAAAATCACCTGTTCTGCGGCGGCGTCGGCAGAGGAGGAGAGGAGCAAGATTCGGCTGGGACTGCCAGCAAAGGCCGCATGGCTGCCGACACTCTCGATCTCCTCAAGGACTGCCAGGTTTCCGTCAAGCACGTCAATCCTCACCAGTGCGTTGCTAAAATTCCTGCGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGTTGTCTGGGGATTTGGACCTTGGCATTGCCGGTTTTGACACCGTCAGTGAATATGGACGGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGATATGGGGAGTGCCACTTATCCCTTGCAAACATTAACTCACTGAATGAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGCAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGGCAGTTCTTGTTGCAAGCAAGAGATCCTCGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTGTACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGTTGCAGTATGACAATAGTAACTTGTCTTCTCTTGGTCACATCCTGATCCTTTCCCAACAATGTACACGGTTGCTCTGGCAGGGACCGACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGAGTACTACTCCATTGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTGAGAGCGATCGGAGGCAGTGGGGTTCTATATTCCCCTTTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCGCAAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

356

Amino Acids

38.81

Weight (kDa)

6.51

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	87 - 194	1.5e-15	ATP phosphoribosyltransferase
HisG_C	PF08029	285 - 337	3.6e-06	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	81, 84, 139, 578
AclWI	GGATC	2 cut(s)	597, 814
AcsI	RAATTY	2 cut(s)	222, 506
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	5 cut(s)	691, 838, 871, 911, 960
AgsI	TTSAA	3 cut(s)	65, 257, 632
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	433, 551, 572, 764
AluI	AGCT	4 cut(s)	433, 551, 572, 764
Alw21I	GWGCWC	3 cut(s)	562, 628, 724
Alw44I	GTGCAC	2 cut(s)	624, 720
AlwI	GGATC	2 cut(s)	597, 814
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	4 cut(s)	136, 260, 942, 1063
ApaLI	GTGCAC	2 cut(s)	624, 720
ApeKI	GCWGC	2 cut(s)	146, 569
ApoI	RAATTY	2 cut(s)	222, 506
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	5 cut(s)	301, 500, 529, 857, 943
AsuHPI	GGTGA	3 cut(s)	62, 197, 481
AsuNHI	GCTAGC	1 cut(s)	433
AvaII	GGWCC	4 cut(s)	301, 500, 529, 857
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	2 cut(s)	628, 724
BarI	GAAGNNNNNNTAC	2 cut(s)	784, 816
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	3 cut(s)	562, 628, 724
BbvI	GCAGC	2 cut(s)	133, 581
BccI	CCATC	4 cut(s)	548, 763, 884, 1032
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	179
BfaI	CTAG	2 cut(s)	434, 456
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	6 cut(s)	82, 85, 139, 147, 570, 579
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	6 cut(s)	83, 86, 140, 148, 571, 580
BmcAI	AGTACT	1 cut(s)	911
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	4 cut(s)	301, 500, 529, 857
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	5 cut(s)	301, 500, 529, 857, 943
BmiI	GGNNCC	3 cut(s)	501, 502, 858
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	364
BmtI	GCTAGC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
Bpu10I	CCTNAGC	1 cut(s)	746
Bpu1102I	GCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	152, 584
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	208, 487, 531
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	813
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	726, 959
BseNI	ACTGG	3 cut(s)	208, 487, 531
BseRI	GAGGAG	6 cut(s)	26, 29, 111, 114, 119, 155
BseSI	GKGCMC	2 cut(s)	628, 724
BseXI	GCAGC	2 cut(s)	133, 581
BseYI	CCCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	978
BshFI	GGCC	4 cut(s)	138, 262, 944, 1065
BsiEI	CGRYCG	1 cut(s)	978
BsiHKAI	GWGCWC	3 cut(s)	562, 628, 724
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	3 cut(s)	136, 486, 870
BsmFI	GGGAC	3 cut(s)	136, 486, 870
BsnI	GGCC	4 cut(s)	138, 262, 944, 1065
Bsp1286I	GDGCHC	3 cut(s)	562, 628, 724
Bsp1407I	TGTACA	2 cut(s)	836, 958
Bsp143I	GATC	5 cut(s)	160, 355, 602, 819, 975
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	4 cut(s)	81, 84, 139, 578
BspANI	GGCC	4 cut(s)	138, 262, 944, 1065
BspCNI	CTCAG	2 cut(s)	727, 960
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	501, 502, 858
BspOI	GCTAGC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	597, 814
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	314
BsrGI	TGTACA	2 cut(s)	836, 958
BsrI	ACTGG	3 cut(s)	208, 487, 531
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	5 cut(s)	160, 355, 602, 819, 975
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	5 cut(s)	58, 328, 694, 843, 874
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstAUI	TGTACA	2 cut(s)	836, 958
BstC8I	GCNNGC	4 cut(s)	130, 435, 595, 752
BstDEI	CTNAG	4 cut(s)	264, 735, 746, 968
BstF5I	GGATG	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	5 cut(s)	163, 358, 605, 822, 978
BstMBI	GATC	5 cut(s)	160, 355, 602, 819, 975
BstMCI	CGRYCG	1 cut(s)	978
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 125, 138, 557, 566, 575, 578
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstSLI	GKGCMC	2 cut(s)	628, 724
BstV1I	GCAGC	2 cut(s)	133, 581
BstV2I	GAAGAC	1 cut(s)	792
BstX2I	RGATCY	2 cut(s)	355, 602
BstYI	RGATCY	2 cut(s)	355, 602
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	138, 262, 944, 1065
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	813
BtsI	GCAGTG	1 cut(s)	991
BtsIMutI	CAGTG	7 cut(s)	54, 215, 337, 422, 692, 879, 991
Cac8I	GCNNGC	4 cut(s)	130, 435, 595, 752
CaiI	CAGNNNCTG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	5 cut(s)	301, 500, 529, 857, 943
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	5 cut(s)	690, 837, 870, 910, 959
CviAII	CATG	4 cut(s)	142, 371, 533, 641
CviQI	GTAC	5 cut(s)	690, 837, 870, 910, 959
DdeI	CTNAG	4 cut(s)	264, 735, 746, 968
DpnI	GATC	5 cut(s)	162, 357, 604, 821, 977
DpnII	GATC	5 cut(s)	160, 355, 602, 819, 975
Eco130I	CCWWGG	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	262
Eco47I	GGWCC	4 cut(s)	301, 500, 529, 857
Eco81I	CCTNAGG	1 cut(s)	264
EcoO109I	RGGNCCY	2 cut(s)	500, 943
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	4 cut(s)	145, 374, 536, 644
FaqI	GGGAC	3 cut(s)	136, 486, 870
FatI	CATG	4 cut(s)	141, 370, 532, 640
FauNDI	CATATG	1 cut(s)	926
Fnu4HI	GCNGC	6 cut(s)	82, 85, 139, 147, 570, 579
FokI	GGATG	1 cut(s)	800
Fsp4HI	GCNGC	6 cut(s)	82, 85, 139, 147, 570, 579
FspBI	CTAG	2 cut(s)	434, 456
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	6 cut(s)	82, 85, 139, 147, 570, 579
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	138, 262, 944, 1065
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	145, 374, 536, 644
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	113, 646, 741
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	62, 197, 481
Hpy166II	GTNNAC	5 cut(s)	626, 690, 722, 839, 1046
Hpy188I	TCNGA	1 cut(s)	980
Hpy188III	TCNNGA	4 cut(s)	158, 371, 650, 817
Hpy8I	GTNNAC	5 cut(s)	626, 690, 722, 839, 1046
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	5 cut(s)	58, 328, 694, 843, 874
HpyCH4IV	ACGT	2 cut(s)	195, 886
HpyCH4V	TGCA	9 cut(s)	410, 514, 593, 626, 701, 722, 772, 778, 882
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 125, 138, 557, 566, 575, 578
HpyF3I	CTNAG	4 cut(s)	264, 735, 746, 968
HpySE526I	ACGT	2 cut(s)	195, 886
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	145, 374, 536, 644
HspAI	GCGC	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	500
Kzo9I	GATC	5 cut(s)	160, 355, 602, 819, 975
LmnI	GCTCC	4 cut(s)	9, 106, 557, 577
Lsp1109I	GCAGC	2 cut(s)	133, 581
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	434, 456
MaeII	ACGT	2 cut(s)	195, 886
MaeIII	GTNAC	3 cut(s)	52, 791, 809
MalI	GATC	5 cut(s)	162, 357, 604, 821, 977
MboI	GATC	5 cut(s)	160, 355, 602, 819, 975
MboII	GAAGA	3 cut(s)	365, 792, 1037
MflI	RGATCY	2 cut(s)	355, 602
MhlI	GDGCHC	3 cut(s)	562, 628, 724
MluCI	AATT	3 cut(s)	222, 238, 506
MlyI	GAGTC	1 cut(s)	750
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	929
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	7 cut(s)	90, 125, 138, 557, 566, 575, 578
NdeI	CATATG	1 cut(s)	926
NdeII	GATC	5 cut(s)	160, 355, 602, 819, 975
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	145, 374, 536, 644
NlaIV	GGNNCC	3 cut(s)	501, 502, 858
NmuCI	GTSAC	2 cut(s)	52, 809
PagI	TCATGA	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	113, 646
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	6 cut(s)	83, 86, 140, 148, 571, 580
Ple19I	CGATCG	1 cut(s)	978
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
PpuMI	RGGWCCY	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	501, 502, 858
PspPI	GGNCC	5 cut(s)	301, 500, 529, 857, 943
PspPPI	RGGWCCY	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	355, 602
PsyI	GACNNNGTC	1 cut(s)	326
PvuI	CGATCG	1 cut(s)	978
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	5 cut(s)	691, 838, 871, 911, 960
RsaNI	GTAC	5 cut(s)	690, 837, 870, 910, 959
RseI	CAYNNNNRTG	1 cut(s)	929
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	6 cut(s)	82, 85, 139, 147, 570, 579
Sau3AI	GATC	5 cut(s)	160, 355, 602, 819, 975
Sau96I	GGNCC	5 cut(s)	301, 500, 529, 857, 943
ScaI	AGTACT	1 cut(s)	911
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	3 cut(s)	562, 628, 724
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	4 cut(s)	301, 500, 529, 857
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	2 cut(s)	167, 563
SmoI	CTYRAG	2 cut(s)	167, 563
Sse9I	AATT	3 cut(s)	222, 238, 506
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	4 cut(s)	81, 84, 139, 578
SspMI	CTAG	2 cut(s)	434, 456
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	5 cut(s)	58, 328, 694, 843, 874
TaiI	ACGT	2 cut(s)	198, 889
TaqI	TCGA	1 cut(s)	159
TaqII	GACCGA	1 cut(s)	874
TasI	AATT	3 cut(s)	222, 238, 506
TatI	WGTACW	4 cut(s)	836, 869, 909, 958
TauI	GCSGC	4 cut(s)	84, 87, 141, 581
TfiI	GAWTC	2 cut(s)	113, 646
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	7 cut(s)	61, 215, 337, 429, 692, 879, 991
TseFI	GTSAC	2 cut(s)	52, 809
TseI	GCWGC	2 cut(s)	146, 569
Tsp45I	GTSAC	2 cut(s)	52, 809
TspDTI	ATGAA	3 cut(s)	359, 632, 1038
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	7 cut(s)	61, 215, 337, 429, 692, 879, 991
Tth111I	GACNNNGTC	1 cut(s)	326
VneI	GTGCAC	2 cut(s)	624, 720
VpaK11BI	GGWCC	4 cut(s)	301, 500, 529, 857
XapI	RAATTY	2 cut(s)	222, 506
XspI	CTAG	2 cut(s)	434, 456
ZrmI	AGTACT	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.