Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

8854468 .. 8862201

Gene Structure 7734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTTGGCGGCAAACCCACCCAAACGCCCCTTCTTTCTTACTCACTCCCTCCACCTCTCCTCCTCTCCCTCGCCGTCCTTCAAGATCACCTGTTCTGCGGCGGCGGAGGAGAGGAGCGAGTTTCGGCTGGGACTGCCCAACGAAGGCCACATCACCGCCGACACTCTCGATCTCCTGAAGGACTGCCAGCTGTCCATCAAGCACATCAATCCTTGCCAGTACGTTGCTAAAATTCCTGAGCTGTCTAATTTGGAAGGGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGTTGTCTAGGGATTTGGACCTTGGCATTACCGGTCTTGACACCGTCAGTGAATATGGACAGGGGAGTGAAGATCTTATCATTGTTCACGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAACTCACTGAATAAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGCGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGAAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGGCCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGAGGGGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTTTCCTTGAAAGGAAAAGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACACCATTGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTGAGAGCGTTTGGAGGCAGTCGGGTTCGATGTTCCCCTGTGACTTGCATTTGTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCTAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

378

Amino Acids

41.49

Weight (kDa)

8.28

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	90 - 266	2.8e-32	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	824
AciI	CCGC	5 cut(s)	8, 98, 101, 104, 156
AclWI	GGATC	1 cut(s)	732
AcsI	RAATTY	2 cut(s)	231, 539
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	3 cut(s)	221, 937, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	143, 431, 614
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	5 cut(s)	82, 266, 679, 767, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	7 cut(s)	190, 241, 466, 584, 605, 623, 899
AluI	AGCT	7 cut(s)	190, 241, 466, 584, 605, 623, 899
Alw21I	GWGCWC	2 cut(s)	763, 859
Alw44I	GTGCAC	2 cut(s)	759, 855
AlwI	GGATC	1 cut(s)	732
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	5 cut(s)	145, 269, 637, 1008, 1129
ApaLI	GTGCAC	2 cut(s)	759, 855
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	2 cut(s)	231, 539
AsiGI	ACCGGT	1 cut(s)	323
AspS9I	GGNCC	6 cut(s)	310, 533, 562, 637, 923, 1009
AsuHPI	GGTGA	3 cut(s)	79, 145, 514
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	4 cut(s)	310, 533, 562, 923
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	763, 859
Bbv12I	GWGCWC	2 cut(s)	763, 859
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	5 cut(s)	203, 607, 898, 950, 1098
BceAI	ACGGC	1 cut(s)	58
BfaI	CTAG	3 cut(s)	300, 467, 489
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	4 cut(s)	9, 99, 102, 603
BlpI	GCTNAGC	1 cut(s)	870
BlsI	GCNGC	4 cut(s)	10, 100, 103, 604
Bme18I	GGWCC	4 cut(s)	310, 533, 562, 923
BmgT120I	GGNCC	6 cut(s)	310, 533, 562, 637, 923, 1009
BmiI	GGNNCC	3 cut(s)	534, 535, 925
BmsI	GCATC	2 cut(s)	373, 616
BmtI	GCTAGC	1 cut(s)	470
Bpu10I	CCTNAGC	2 cut(s)	237, 881
Bpu1102I	GCTNAGC	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 684, 714
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 431, 614
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	217, 520, 564
Bse21I	CCTNAGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	3 cut(s)	143, 431, 614
BseMII	CTCAG	3 cut(s)	228, 861, 1025
BseNI	ACTGG	3 cut(s)	217, 520, 564
BseRI	GAGGAG	4 cut(s)	49, 52, 122, 127
BseSI	GKGCMC	2 cut(s)	763, 859
BseXI	GCAGC	1 cut(s)	614
BseYI	CCCAGC	1 cut(s)	127
BshFI	GGCC	5 cut(s)	147, 271, 639, 1010, 1131
BshTI	ACCGGT	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	763, 859
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	144, 519
BslI	CCNNNNNNNGG	3 cut(s)	143, 431, 614
BsmFI	GGGAC	2 cut(s)	144, 519
BsnI	GGCC	5 cut(s)	147, 271, 639, 1010, 1131
Bsp1286I	GDGCHC	2 cut(s)	763, 859
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp143I	GATC	5 cut(s)	84, 169, 364, 684, 737
Bsp1720I	GCTNAGC	1 cut(s)	870
BspACI	CCGC	5 cut(s)	8, 98, 101, 104, 156
BspANI	GGCC	5 cut(s)	147, 271, 639, 1010, 1131
BspCNI	CTCAG	3 cut(s)	229, 862, 1026
BspLI	GGNNCC	3 cut(s)	534, 535, 925
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	732
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	3 cut(s)	217, 520, 564
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	5 cut(s)	84, 169, 364, 684, 737
BssNAI	GTATAC	1 cut(s)	825
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	825
Bst4CI	ACNGT	3 cut(s)	337, 829, 940
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	1024
BstC8I	GCNNGC	4 cut(s)	188, 468, 730, 887
BstDEI	CTNAG	5 cut(s)	237, 273, 870, 881, 1034
BstKTI	GATC	5 cut(s)	87, 172, 367, 687, 740
BstMBI	GATC	5 cut(s)	84, 169, 364, 684, 737
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 590, 599, 608
BstSLI	GKGCMC	2 cut(s)	763, 859
BstV1I	GCAGC	1 cut(s)	614
BstX2I	RGATCY	2 cut(s)	364, 737
BstYI	RGATCY	2 cut(s)	364, 737
BstZ17I	GTATAC	1 cut(s)	825
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	5 cut(s)	147, 271, 639, 1010, 1131
BtgZI	GCGATG	1 cut(s)	626
BtsIMutI	CAGTG	4 cut(s)	346, 455, 659, 945
Cac8I	GCNNGC	4 cut(s)	188, 468, 730, 887
CaiI	CAGNNNCTG	1 cut(s)	608
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	6 cut(s)	310, 533, 562, 637, 923, 1009
Csp6I	GTAC	3 cut(s)	220, 936, 1025
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	2 cut(s)	566, 776
CviQI	GTAC	3 cut(s)	220, 936, 1025
DdeI	CTNAG	5 cut(s)	237, 273, 870, 881, 1034
DpnI	GATC	5 cut(s)	86, 171, 366, 686, 739
DpnII	GATC	5 cut(s)	84, 169, 364, 684, 737
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	271
Eco47I	GGWCC	4 cut(s)	310, 533, 562, 923
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	3 cut(s)	533, 923, 1009
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	569, 779
FalI	AAGNNNNNCTT	4 cut(s)	705, 737, 725, 757
FaqI	GGGAC	2 cut(s)	144, 519
FatI	CATG	2 cut(s)	565, 775
FauNDI	CATATG	1 cut(s)	992
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	4 cut(s)	9, 99, 102, 603
Fsp4HI	GCNGC	4 cut(s)	9, 99, 102, 603
FspBI	CTAG	3 cut(s)	300, 467, 489
GluI	GCNGC	4 cut(s)	9, 99, 102, 603
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	5 cut(s)	147, 271, 639, 1010, 1131
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	2 cut(s)	569, 779
HinfI	GANTC	2 cut(s)	781, 876
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	3 cut(s)	79, 145, 514
Hpy166II	GTNNAC	5 cut(s)	379, 761, 825, 857, 1112
Hpy188III	TCNNGA	7 cut(s)	82, 167, 175, 236, 329, 380, 785
Hpy8I	GTNNAC	5 cut(s)	379, 761, 825, 857, 1112
HpyAV	CCTTC	5 cut(s)	40, 88, 137, 172, 248
HpyCH4III	ACNGT	3 cut(s)	337, 829, 940
HpyCH4IV	ACGT	2 cut(s)	222, 952
HpyCH4V	TGCA	8 cut(s)	419, 629, 728, 761, 836, 857, 948, 1080
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 590, 599, 608
HpyF3I	CTNAG	5 cut(s)	237, 273, 870, 881, 1034
HpySE526I	ACGT	2 cut(s)	222, 952
Hsp92II	CATG	2 cut(s)	569, 779
KflI	GGGWCCC	1 cut(s)	533
Kzo9I	GATC	5 cut(s)	84, 169, 364, 684, 737
LmnI	GCTCC	2 cut(s)	114, 610
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	2 cut(s)	373, 616
MaeI	CTAG	3 cut(s)	300, 467, 489
MaeII	ACGT	2 cut(s)	222, 952
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	5 cut(s)	86, 171, 366, 686, 739
MboI	GATC	5 cut(s)	84, 169, 364, 684, 737
MboII	GAAGA	2 cut(s)	374, 1103
MflI	RGATCY	2 cut(s)	364, 737
MhlI	GDGCHC	2 cut(s)	763, 859
MluCI	AATT	5 cut(s)	231, 247, 539, 630, 673
MlyI	GAGTC	1 cut(s)	885
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	995
MspA1I	CMGCKG	2 cut(s)	190, 584
MspI	CCGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	133, 590, 599, 608
NdeI	CATATG	1 cut(s)	992
NdeII	GATC	5 cut(s)	84, 169, 364, 684, 737
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	2 cut(s)	569, 779
NlaIV	GGNNCC	3 cut(s)	534, 535, 925
NmuCI	GTSAC	1 cut(s)	1072
PceI	AGGCCT	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	781
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	10, 100, 103, 604
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PpuMI	RGGWCCY	2 cut(s)	533, 923
Psp5II	RGGWCCY	2 cut(s)	533, 923
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	534, 535, 925
PspPI	GGNCC	6 cut(s)	310, 533, 562, 637, 923, 1009
PspPPI	RGGWCCY	2 cut(s)	533, 923
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	364, 737
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	2 cut(s)	190, 584
RsaI	GTAC	3 cut(s)	221, 937, 1026
RsaNI	GTAC	3 cut(s)	220, 936, 1025
RseI	CAYNNNNRTG	1 cut(s)	995
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	4 cut(s)	9, 99, 102, 603
Sau3AI	GATC	5 cut(s)	84, 169, 364, 684, 737
Sau96I	GGNCC	6 cut(s)	310, 533, 562, 637, 923, 1009
SchI	GAGTC	1 cut(s)	885
SduI	GDGCHC	2 cut(s)	763, 859
SfaNI	GCATC	2 cut(s)	373, 616
SinI	GGWCC	4 cut(s)	310, 533, 562, 923
SmiMI	CAYNNNNRTG	1 cut(s)	995
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	5 cut(s)	231, 247, 539, 630, 673
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	5 cut(s)	8, 98, 101, 104, 156
SspMI	CTAG	3 cut(s)	300, 467, 489
StuI	AGGCCT	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	337, 829, 940
TaiI	ACGT	2 cut(s)	225, 955
TaqI	TCGA	3 cut(s)	168, 687, 1060
TasI	AATT	5 cut(s)	231, 247, 539, 630, 673
TatI	WGTACW	2 cut(s)	935, 1024
TauI	GCSGC	3 cut(s)	11, 101, 104
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	4 cut(s)	346, 462, 666, 945
TseFI	GTSAC	1 cut(s)	1072
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	1072
TspDTI	ATGAA	3 cut(s)	603, 767, 1104
TspRI	CASTG	4 cut(s)	346, 462, 666, 945
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	431
VneI	GTGCAC	2 cut(s)	759, 855
VpaK11BI	GGWCC	4 cut(s)	310, 533, 562, 923
XapI	RAATTY	2 cut(s)	231, 539
XmiI	GTMKAC	1 cut(s)	824
XspI	CTAG	3 cut(s)	300, 467, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.