Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

8869489 .. 8876460

Gene Structure 6972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTGGCGGCAATCAAATGCCCCTTCTTTCTTACTCACTCCCTGCCCCCCTCCTCCTCTCCCTCGCCATCCTTCAAAATCACCTGTTCTGCGGCGGCGTCGGTGGCGGAGGAGAGGAGCGAGATTCGGCTAGGACTGCCCAGCAAAGGCCGCATGGCCGCTGACACTCTCGATCTCCTCAAGGACTGCCAGTTGTCCGTCAAGCACGTCAATCCTCGCCAGTACGTTGCTAAAATTCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGTCAGTGAATATGGACGGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAACTCACTGAATGAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGTGTTTTTCCACAGCTGATGGAGCCCTTGAGGCAGCTCCTGCGATGGGAATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTGTAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATTGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTGAGAGCGATCGGAGGCAGTGGGGTTCTATATTCCCCTTTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCAAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

375

Amino Acids

40.93

Weight (kDa)

7.04

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	91 - 267	3.8e-36	ATP phosphoribosyltransferase
HisG_C	PF08029	272 - 356	3.4e-11	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	827
AciI	CCGC	6 cut(s)	8, 92, 95, 107, 151, 159
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	2 cut(s)	234, 542
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	3 cut(s)	224, 928, 1017
AfiI	CCNNNNNNNGG	3 cut(s)	146, 434, 617
AgsI	TTSAA	4 cut(s)	76, 269, 682, 770
AjiI	CACGTC	1 cut(s)	208
AluBI	AGCT	6 cut(s)	244, 469, 587, 608, 626, 902
AluI	AGCT	6 cut(s)	244, 469, 587, 608, 626, 902
Alw21I	GWGCWC	2 cut(s)	766, 862
Alw44I	GTGCAC	2 cut(s)	762, 858
AlwI	GGATC	1 cut(s)	735
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	5 cut(s)	148, 156, 272, 999, 1120
ApaLI	GTGCAC	2 cut(s)	762, 858
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	2 cut(s)	234, 542
AspS9I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
AsuHPI	GGTGA	2 cut(s)	73, 517
AsuNHI	GCTAGC	1 cut(s)	469
AvaII	GGWCC	5 cut(s)	313, 536, 565, 640, 914
AxyI	CCTNAGG	1 cut(s)	276
BaeGI	GKGCMC	2 cut(s)	766, 862
BanII	GRGCYC	1 cut(s)	598
Bbv12I	GWGCWC	2 cut(s)	766, 862
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	6 cut(s)	76, 584, 610, 901, 941, 1089
BfaI	CTAG	3 cut(s)	131, 470, 492
BglI	GCCNNNNNGGC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	6 cut(s)	10, 94, 97, 152, 160, 607
Bme18I	GGWCC	5 cut(s)	313, 536, 565, 640, 914
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
BmiI	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
BmsI	GCATC	2 cut(s)	376, 619
BmtI	GCTAGC	1 cut(s)	473
Bpu10I	CCTNAGC	2 cut(s)	240, 884
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	2 cut(s)	164, 620
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 434, 617
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	4 cut(s)	190, 220, 523, 567
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	3 cut(s)	146, 434, 617
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	231, 864, 1016
BseNI	ACTGG	4 cut(s)	190, 220, 523, 567
BseRI	GAGGAG	6 cut(s)	43, 46, 125, 130, 167, 711
BseSI	GKGCMC	2 cut(s)	766, 862
BseXI	GCAGC	1 cut(s)	617
BseYI	CCCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	1035
BshFI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
BsiEI	CGRYCG	1 cut(s)	1035
BsiHKAI	GWGCWC	2 cut(s)	766, 862
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	522, 927
BslI	CCNNNNNNNGG	3 cut(s)	146, 434, 617
BsmFI	GGGAC	2 cut(s)	522, 927
BsnI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
Bsp1286I	GDGCHC	3 cut(s)	598, 766, 862
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	5 cut(s)	172, 367, 687, 740, 1032
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	6 cut(s)	8, 92, 95, 107, 151, 159
BspANI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
BspCNI	CTCAG	3 cut(s)	232, 865, 1017
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
BspOI	GCTAGC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	735
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	4 cut(s)	190, 220, 523, 567
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	5 cut(s)	172, 367, 687, 740, 1032
BssNAI	GTATAC	1 cut(s)	828
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	828
Bst4CI	ACNGT	4 cut(s)	340, 832, 922, 931
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	471, 733, 890
BstDEI	CTNAG	5 cut(s)	240, 276, 873, 884, 1025
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	5 cut(s)	175, 370, 690, 743, 1035
BstMBI	GATC	5 cut(s)	172, 367, 687, 740, 1032
BstMCI	CGRYCG	1 cut(s)	1035
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 136, 150, 593, 602, 611
BstSLI	GKGCMC	2 cut(s)	766, 862
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	2 cut(s)	367, 740
BstYI	RGATCY	2 cut(s)	367, 740
BstZ17I	GTATAC	1 cut(s)	828
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
BtgZI	GCGATG	1 cut(s)	629
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	6 cut(s)	349, 458, 662, 918, 936, 1048
Cac8I	GCNNGC	3 cut(s)	471, 733, 890
CaiI	CAGNNNCTG	1 cut(s)	611
CciI	TCATGA	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	223, 927, 1016
CviAII	CATG	4 cut(s)	154, 383, 569, 779
CviQI	GTAC	3 cut(s)	223, 927, 1016
DdeI	CTNAG	5 cut(s)	240, 276, 873, 884, 1025
DpnI	GATC	5 cut(s)	174, 369, 689, 742, 1034
DpnII	GATC	5 cut(s)	172, 367, 687, 740, 1032
EaeI	YGGCCR	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	598
Eco47I	GGWCC	5 cut(s)	313, 536, 565, 640, 914
Eco81I	CCTNAGG	1 cut(s)	276
EcoO109I	RGGNCCY	3 cut(s)	536, 914, 1000
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	157, 386, 572, 782
FalI	AAGNNNNNCTT	4 cut(s)	708, 740, 728, 760
FaqI	GGGAC	2 cut(s)	522, 927
FatI	CATG	4 cut(s)	153, 382, 568, 778
FauNDI	CATATG	1 cut(s)	983
FblI	GTMKAC	1 cut(s)	827
Fnu4HI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
FspBI	CTAG	3 cut(s)	131, 470, 492
GluI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	157, 386, 572, 782
HinfI	GANTC	3 cut(s)	124, 784, 879
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	73, 517
Hpy166II	GTNNAC	4 cut(s)	764, 828, 860, 1103
Hpy188I	TCNGA	1 cut(s)	1037
Hpy188III	TCNNGA	5 cut(s)	170, 239, 332, 383, 788
Hpy8I	GTNNAC	4 cut(s)	764, 828, 860, 1103
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	34, 82
HpyCH4III	ACNGT	4 cut(s)	340, 832, 922, 931
HpyCH4IV	ACGT	3 cut(s)	207, 225, 943
HpyCH4V	TGCA	8 cut(s)	422, 632, 731, 764, 839, 860, 910, 939
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 136, 150, 593, 602, 611
HpyF3I	CTNAG	5 cut(s)	240, 276, 873, 884, 1025
HpySE526I	ACGT	3 cut(s)	207, 225, 943
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	157, 386, 572, 782
KflI	GGGWCCC	2 cut(s)	536, 914
Kzo9I	GATC	5 cut(s)	172, 367, 687, 740, 1032
LmnI	GCTCC	3 cut(s)	117, 593, 613
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	376, 619
MaeI	CTAG	3 cut(s)	131, 470, 492
MaeII	ACGT	3 cut(s)	207, 225, 943
MalI	GATC	5 cut(s)	174, 369, 689, 742, 1034
MboI	GATC	5 cut(s)	172, 367, 687, 740, 1032
MboII	GAAGA	2 cut(s)	377, 1094
MflI	RGATCY	2 cut(s)	367, 740
MhlI	GDGCHC	3 cut(s)	598, 766, 862
MluCI	AATT	5 cut(s)	234, 250, 542, 633, 676
MlyI	GAGTC	1 cut(s)	888
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	986
MspA1I	CMGCKG	2 cut(s)	161, 587
MspI	CCGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	6 cut(s)	104, 136, 150, 593, 602, 611
NdeI	CATATG	1 cut(s)	983
NdeII	GATC	5 cut(s)	172, 367, 687, 740, 1032
NheI	GCTAGC	1 cut(s)	469
NlaIII	CATG	4 cut(s)	157, 386, 572, 782
NlaIV	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	124, 784
PflFI	GACNNNGTC	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	10, 94, 97, 152, 160, 607
Ple19I	CGATCG	1 cut(s)	1035
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PpuMI	RGGWCCY	2 cut(s)	536, 914
Psp5II	RGGWCCY	2 cut(s)	536, 914
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
PspPI	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
PspPPI	RGGWCCY	2 cut(s)	536, 914
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	367, 740
PsyI	GACNNNGTC	1 cut(s)	338
PvuI	CGATCG	1 cut(s)	1035
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	224, 928, 1017
RsaNI	GTAC	3 cut(s)	223, 927, 1016
RseI	CAYNNNNRTG	1 cut(s)	986
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
Sau3AI	GATC	5 cut(s)	172, 367, 687, 740, 1032
Sau96I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
SchI	GAGTC	1 cut(s)	888
SduI	GDGCHC	3 cut(s)	598, 766, 862
SfaNI	GCATC	2 cut(s)	376, 619
SinI	GGWCC	5 cut(s)	313, 536, 565, 640, 914
SmiMI	CAYNNNNRTG	1 cut(s)	986
SmlI	CTYRAG	2 cut(s)	179, 599
SmoI	CTYRAG	2 cut(s)	179, 599
Sse9I	AATT	5 cut(s)	234, 250, 542, 633, 676
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	6 cut(s)	8, 92, 95, 107, 151, 159
SspMI	CTAG	3 cut(s)	131, 470, 492
StuI	AGGCCT	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	4 cut(s)	340, 832, 922, 931
TaiI	ACGT	3 cut(s)	210, 228, 946
TaqI	TCGA	2 cut(s)	171, 690
TasI	AATT	5 cut(s)	234, 250, 542, 633, 676
TatI	WGTACW	2 cut(s)	926, 1015
TauI	GCSGC	5 cut(s)	11, 95, 98, 153, 161
TfiI	GAWTC	2 cut(s)	124, 784
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	6 cut(s)	349, 465, 669, 925, 936, 1048
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	371, 770, 1095
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	6 cut(s)	349, 465, 669, 925, 936, 1048
Tth111I	GACNNNGTC	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	434
VneI	GTGCAC	2 cut(s)	762, 858
VpaK11BI	GGWCC	5 cut(s)	313, 536, 565, 640, 914
XapI	RAATTY	2 cut(s)	234, 542
XmiI	GTMKAC	1 cut(s)	827
XspI	CTAG	3 cut(s)	131, 470, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.