Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

728223 .. 731651

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTTGGCATCAAACCTGCCAAAGAGTCCCTTCTTCCCCACCCACTATGTCCCCATCTCCCGCTCCTTCCACATCTCCTGCAGCGTCTCGCTGCAAACAGCGGCGGCGGAAGTAGTGAACGGCCGAGTTTCTGAACGGAACGAGATTCGCCTCGGCCTGCCAAGCAAAGGCCGTATGGCCGCCGACACTCTTGATCTTCTCAAGGACTGCCAGCTGTCCGTCAAGCACGTCAATCCTCGTCAATACGTCGCCCAAATCCCACAGCTATCGAACTTGGAGGTGTGGTTTCAGCGGCCGAAGGACATTGTGCGGAAATTATTGTCTGGAGACTTGGACCTTGGCATTGCGGGTTTTGATACTGTCAGTGAGTATGGAGAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGATTATGGGGACTGCCGTTTATCCCTTGCAATTCCAAAATACGGGATTTTTGAAAATATAAATTCACTGAAGGAGCTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTCTCCGAGTTGCTACTGGCTTCACCTATCTCGGTCCTAAATTTATGAAAGATAATGGATTGAACCATGTGAGTTTTTCAACTGCTGATGGAGCACTCGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGACCTCGTGAGTAGTGGGACGACGCTGAAAGAAAACAACCTAAAAGAGATTGATGGGGGAGTTGTGTTACAAAGCCAGGCAGTTCTTGTTGCAAGCAAGAGGTCATTGATCCAAAGGAAAAGCGCTCTTGACACGACACATGAGATTCTTGAAAGATTAGAAGCACATCTAAGGGCAGAGGGTCAGTTCACGGTAGTTGCAAATATGAGAGGAAACAGTGCAAAGGAAGTGGCTGAGCGAGTCTTGAGCCAGGCATCATTATCTGGTTTGCAGGGACCCACTGTAAGTCCAGTTTTTTGCAAATGTGGTGGGCAAATTGCAGTCGATTACTATGCCATAGTCATATGTGTGCCAAAAAAGGCACTCTACAAGTCCGTTCAACAACTGAGAGCGATTGGAGGCAGCGGAGTTCTAGTTTCCCCATTGACCTACATTTTCGATGAAGAGACTCCAAGATGGCGTGAACTTCTCTCAACGCTTGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

383

Amino Acids

41.7

Weight (kDa)

6.67

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	9 cut(s)	61, 101, 104, 107, 180, 292, 310, 347, 1065
AclWI	GGATC	1 cut(s)	763
AcoI	YGGCCR	3 cut(s)	121, 177, 293
AcsI	RAATTY	2 cut(s)	475, 563
AcuI	CTGAAG	1 cut(s)	503
AfeI	AGCGCT	1 cut(s)	784
AfiI	CCNNNNNNNGG	3 cut(s)	167, 455, 638
AgsI	TTSAA	5 cut(s)	467, 586, 603, 812, 1040
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	735, 909
AluBI	AGCT	5 cut(s)	214, 265, 490, 629, 647
AluI	AGCT	5 cut(s)	214, 265, 490, 629, 647
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	3 cut(s)	91, 321, 1100
AlwI	GGATC	1 cut(s)	763
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	620
Aor51HI	AGCGCT	1 cut(s)	784
AoxI	GGCC	6 cut(s)	121, 154, 169, 177, 293, 1141
ApeKI	GCWGC	4 cut(s)	81, 91, 626, 1062
ApoI	RAATTY	2 cut(s)	475, 563
AspLEI	GCGC	1 cut(s)	785
AspS9I	GGNCC	4 cut(s)	334, 557, 661, 935
AsuHPI	GGTGA	1 cut(s)	538
AsuNHI	GCTAGC	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	4 cut(s)	334, 557, 661, 935
BauI	CACGAG	1 cut(s)	665
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	4 cut(s)	78, 93, 638, 1074
BccI	CCATC	5 cut(s)	62, 605, 631, 707, 1110
BceAI	ACGGC	3 cut(s)	136, 156, 414
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BciT130I	CCWGG	2 cut(s)	737, 911
BcoDI	GTCTC	3 cut(s)	91, 321, 1100
BfaI	CTAG	3 cut(s)	491, 1073, 1147
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	8 cut(s)	82, 92, 102, 105, 180, 293, 627, 1063
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	8 cut(s)	83, 93, 103, 106, 181, 294, 628, 1064
Bme1390I	CCNGG	2 cut(s)	737, 911
Bme18I	GGWCC	4 cut(s)	334, 557, 661, 935
BmeT110I	CYCGRG	1 cut(s)	620
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	4 cut(s)	334, 557, 661, 935
BmiI	GGNNCC	2 cut(s)	936, 937
BmrFI	CCNGG	2 cut(s)	737, 911
BmsI	GCATC	4 cut(s)	17, 397, 640, 923
BmtI	GCTAGC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	345
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	185, 925
BsaJI	CCNNGG	2 cut(s)	151, 337
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 1059, 1089
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 455, 638
Bse1I	ACTGG	2 cut(s)	544, 950
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	737, 911
BseDI	CCNNGG	2 cut(s)	151, 337
BseLI	CCNNNNNNNGG	3 cut(s)	167, 455, 638
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	885, 1037
BseNI	ACTGG	2 cut(s)	544, 950
BseX3I	CGGCCG	2 cut(s)	121, 293
BseXI	GCAGC	4 cut(s)	78, 93, 638, 1074
Bsh1285I	CGRYCG	2 cut(s)	124, 296
BshFI	GGCC	6 cut(s)	123, 156, 171, 179, 295, 1143
BsiEI	CGRYCG	2 cut(s)	124, 296
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	620
BslFI	GGGAC	5 cut(s)	12, 35, 437, 691, 948
BslI	CCNNNNNNNGG	3 cut(s)	167, 455, 638
BsmAI	GTCTC	3 cut(s)	91, 321, 1100
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	5 cut(s)	12, 35, 437, 691, 948
BsnI	GGCC	6 cut(s)	123, 156, 171, 179, 295, 1143
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	3 cut(s)	193, 388, 768
Bsp1720I	GCTNAGC	1 cut(s)	894
BspACI	CCGC	9 cut(s)	61, 101, 104, 107, 180, 292, 310, 347, 1065
BspANI	GGCC	6 cut(s)	123, 156, 171, 179, 295, 1143
BspCNI	CTCAG	2 cut(s)	886, 1038
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	936, 937
BspMAI	CTGCAG	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	24
BspOI	GCTAGC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	763
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	544, 950
BssECI	CCNNGG	2 cut(s)	151, 337
BssMI	GATC	3 cut(s)	193, 388, 768
BssSI	CACGAG	1 cut(s)	665
BssT1I	CCWWGG	1 cut(s)	337
Bst2BI	CACGAG	1 cut(s)	665
Bst2UI	CCWGG	2 cut(s)	737, 911
Bst4CI	ACNGT	4 cut(s)	361, 853, 878, 943
Bst6I	CTCTTC	1 cut(s)	1098
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	4 cut(s)	158, 212, 492, 754
BstDEI	CTNAG	3 cut(s)	830, 894, 1046
BstH2I	RGCGCY	1 cut(s)	786
BstHHI	GCGC	1 cut(s)	785
BstKTI	GATC	3 cut(s)	196, 391, 771
BstMAI	GTCTC	3 cut(s)	91, 321, 1100
BstMBI	GATC	3 cut(s)	193, 388, 768
BstMCI	CGRYCG	2 cut(s)	124, 296
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 614, 623, 632
BstNI	CCWGG	2 cut(s)	737, 911
BstSCI	CCNGG	2 cut(s)	735, 909
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	78, 93, 638, 1074
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BstZI	CGGCCG	2 cut(s)	121, 293
BsuRI	GGCC	6 cut(s)	123, 156, 171, 179, 295, 1143
BtgZI	GCGATG	1 cut(s)	650
BtrI	CACGTC	1 cut(s)	229
BtsIMutI	CAGTG	4 cut(s)	370, 479, 883, 939
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	4 cut(s)	158, 212, 492, 754
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	785
Cfr13I	GGNCC	4 cut(s)	334, 557, 661, 935
CseI	GACGC	2 cut(s)	73, 691
CspCI	CAANNNNNGTGG	4 cut(s)	870, 905, 949, 984
CviAII	CATG	3 cut(s)	404, 590, 800
DdeI	CTNAG	3 cut(s)	830, 894, 1046
DpnI	GATC	3 cut(s)	195, 390, 770
DpnII	GATC	3 cut(s)	193, 388, 768
EaeI	YGGCCR	3 cut(s)	121, 177, 293
EagI	CGGCCG	2 cut(s)	121, 293
Eam1104I	CTCTTC	1 cut(s)	1098
EarI	CTCTTC	1 cut(s)	1098
EciI	GGCGGA	1 cut(s)	122
EclXI	CGGCCG	2 cut(s)	121, 293
Eco130I	CCWWGG	1 cut(s)	337
Eco47I	GGWCC	4 cut(s)	334, 557, 661, 935
Eco47III	AGCGCT	1 cut(s)	784
Eco52I	CGGCCG	2 cut(s)	121, 293
Eco57I	CTGAAG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	935
EcoRII	CCWGG	2 cut(s)	735, 909
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	407, 593, 803
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	5 cut(s)	12, 35, 437, 691, 948
FatI	CATG	3 cut(s)	403, 589, 799
FauI	CCCGC	2 cut(s)	68, 340
FauNDI	CATATG	1 cut(s)	1004
Fnu4HI	GCNGC	8 cut(s)	82, 92, 102, 105, 180, 293, 627, 1063
Fsp4HI	GCNGC	8 cut(s)	82, 92, 102, 105, 180, 293, 627, 1063
FspBI	CTAG	3 cut(s)	491, 1073, 1147
GlaI	GCGC	1 cut(s)	784
GluI	GCNGC	8 cut(s)	82, 92, 102, 105, 180, 293, 627, 1063
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	786
HaeIII	GGCC	6 cut(s)	123, 156, 171, 179, 295, 1143
HgaI	GACGC	2 cut(s)	73, 691
HhaI	GCGC	1 cut(s)	785
Hin1II	CATG	3 cut(s)	407, 593, 803
Hin6I	GCGC	1 cut(s)	783
HinP1I	GCGC	1 cut(s)	783
HinfI	GANTC	5 cut(s)	25, 145, 805, 900, 1108
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	3 cut(s)	118, 849, 1124
Hpy188I	TCNGA	2 cut(s)	133, 530
Hpy188III	TCNNGA	8 cut(s)	191, 324, 404, 413, 667, 788, 809, 904
Hpy8I	GTNNAC	3 cut(s)	118, 849, 1124
Hpy99I	CGWCG	2 cut(s)	251, 685
HpyAV	CCTTC	4 cut(s)	40, 76, 292, 478
HpyCH4III	ACNGT	4 cut(s)	361, 853, 878, 943
HpyCH4IV	ACGT	2 cut(s)	228, 246
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 614, 623, 632
HpyF3I	CTNAG	3 cut(s)	830, 894, 1046
HpySE526I	ACGT	2 cut(s)	228, 246
Hsp92II	CATG	3 cut(s)	407, 593, 803
HspAI	GCGC	1 cut(s)	783
KflI	GGGWCCC	1 cut(s)	935
Kzo9I	GATC	3 cut(s)	193, 388, 768
LmnI	GCTCC	4 cut(s)	68, 487, 614, 634
Lsp1109I	GCAGC	4 cut(s)	78, 93, 638, 1074
LweI	GCATC	4 cut(s)	17, 397, 640, 923
MaeI	CTAG	3 cut(s)	491, 1073, 1147
MaeII	ACGT	2 cut(s)	228, 246
MaeIII	GTNAC	1 cut(s)	726
MalI	GATC	3 cut(s)	195, 390, 770
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	3 cut(s)	193, 388, 768
MboII	GAAGA	4 cut(s)	25, 188, 398, 1115
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	6 cut(s)	314, 444, 475, 563, 654, 975
MlyI	GAGTC	3 cut(s)	34, 909, 1102
MslI	CAYNNNNRTG	1 cut(s)	1007
MspA1I	CMGCKG	4 cut(s)	101, 214, 292, 1065
MspR9I	CCNGG	2 cut(s)	737, 911
MvaI	CCWGG	2 cut(s)	737, 911
MwoI	GCNNNNNNNGC	4 cut(s)	162, 614, 623, 632
NdeI	CATATG	1 cut(s)	1004
NdeII	GATC	3 cut(s)	193, 388, 768
NheI	GCTAGC	1 cut(s)	490
NlaIII	CATG	3 cut(s)	407, 593, 803
NlaIV	GGNNCC	2 cut(s)	936, 937
NmeAIII	GCCGAG	2 cut(s)	132, 149
PaeR7I	CTCGAG	1 cut(s)	620
PagI	TCATGA	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	145, 805
PkrI	GCNGC	8 cut(s)	83, 93, 103, 106, 181, 294, 628, 1064
PleI	GAGTC	3 cut(s)	33, 908, 1102
PpsI	GAGTC	3 cut(s)	33, 908, 1102
PpuMI	RGGWCCY	1 cut(s)	935
Psp5II	RGGWCCY	1 cut(s)	935
Psp6I	CCWGG	2 cut(s)	735, 909
PspGI	CCWGG	2 cut(s)	735, 909
PspN4I	GGNNCC	2 cut(s)	936, 937
PspPI	GGNCC	4 cut(s)	334, 557, 661, 935
PspPPI	RGGWCCY	1 cut(s)	935
PspXI	VCTCGAGB	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	1007
SatI	GCNGC	8 cut(s)	82, 92, 102, 105, 180, 293, 627, 1063
Sau3AI	GATC	3 cut(s)	193, 388, 768
Sau96I	GGNCC	4 cut(s)	334, 557, 661, 935
SchI	GAGTC	3 cut(s)	34, 909, 1102
ScrFI	CCNGG	2 cut(s)	737, 911
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	4 cut(s)	17, 397, 640, 923
SfcI	CTRYAG	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	4 cut(s)	334, 557, 661, 935
SlaI	CTCGAG	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SmlI	CTYRAG	3 cut(s)	200, 620, 904
SmoI	CTYRAG	3 cut(s)	200, 620, 904
Sse9I	AATT	6 cut(s)	314, 444, 475, 563, 654, 975
SsiI	CCGC	9 cut(s)	61, 101, 104, 107, 180, 292, 310, 347, 1065
SspMI	CTAG	3 cut(s)	491, 1073, 1147
StyD4I	CCNGG	2 cut(s)	735, 909
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	4 cut(s)	361, 853, 878, 943
TaiI	ACGT	2 cut(s)	231, 249
TaqI	TCGA	4 cut(s)	269, 621, 984, 1098
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	6 cut(s)	314, 444, 475, 563, 654, 975
TauI	GCSGC	4 cut(s)	104, 107, 182, 295
TfiI	GAWTC	2 cut(s)	145, 805
TscAI	CASTG	4 cut(s)	370, 486, 883, 946
TseI	GCWGC	4 cut(s)	81, 91, 626, 1062
TspDTI	ATGAA	4 cut(s)	392, 399, 584, 1116
TspGWI	ACGGA	3 cut(s)	151, 208, 1024
TspRI	CASTG	4 cut(s)	370, 486, 883, 946
VpaK11BI	GGWCC	4 cut(s)	334, 557, 661, 935
XapI	RAATTY	2 cut(s)	475, 563
XhoI	CTCGAG	1 cut(s)	620
XspI	CTAG	3 cut(s)	491, 1073, 1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.