Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

1127316 .. 1132181

Gene Structure 4866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTGGCGTCAAATCCAAATCTAACAAAGTGCCCGTTCTTTCCTACTCGCTACGTTCCCATCTCCCGGTCTTTCCACATCACATGTAGCGTTTCGCAGCTGCAATCGGCGGCGGAAGTGGTGAATGGAAGAGTCCCCGAGAGGAACGAGATTCGTCTTGGCTTGCCAAGCAAAGGCCGCATGGCCGCCGACACTCTTGATCTTCTCAAGGATTGTCAATTGTCCGTCAAGCATGTCAATCCGCGCCAATATGTTGCACAAATCCCACAGCTTTCGGATTTGGAAGTGTGGTTTCAACGGCCCAAAGACATTGTACGGAAATTGTTGTCTGGAGACTTAGACCTTGGCATAGCAGGTTTTGATACCGTCAGCGAATATGGGCAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGATTATGGGGACTGCCGCTTATCCCTTGCAATTCCAAAATATGGGATTTTTGAGAATATAAATTCACTGAAGGATTTAGCACAAATGCCTCAATGGACTGAAGAGAAACCTCTTCGAGTTGCTACTGGCTTCACCTATCTGGGACCGAAATTTATGAAAGAAAATGGACTGAACCATGTGAGCTTTTCAACTGCCGATGGAGCACTTGAGGCAGCTCCCGCGATGGGGATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATCACACTGAAAGAAAACAACTTGAAAGAGATCGAGGGGGGAGTTGTGTTGCGAAGCCAGGCAGTTCTTGTTGCAAGCAAGAGATCGTTGATCCAAAGGAAAAGTGCACTGGACACAACACATGAGATTCTTGAAAGATTGGAGGCACATCTAAGGGCTGAGGGTCAGTTCACGGTAACTGCAAATATGAGAGGAAGTAGTACAGAGGAAGTGGCTGAGCGTGTCTTGAGCCAGCCATCATTATCAGGTTTGCAGGGACCCACCATAAGTCCGGTTTTTTGCAAACGTGATGGGCAAATTTCTTCTGATTACTATGCCATAGTCATATGTGTACCCAAAAAGGCGCTCTACAAGTCTGTACAACAACTGAGAGCGATTGGAGGCAGCGGGGTTCTAGTTTCCCCTTTGACCTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCAGCACTTGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

385

Amino Acids

42.2

Weight (kDa)

6.13

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccII	CGCG	2 cut(s)	244, 641
AciI	CCGC	8 cut(s)	110, 113, 178, 186, 242, 436, 639, 1071
AclWI	GGATC	2 cut(s)	692, 769
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	3 cut(s)	481, 569, 981
AcuI	CTGAAG	2 cut(s)	509, 540
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	4 cut(s)	315, 886, 1017, 1044
AfiI	CCNNNNNNNGG	5 cut(s)	66, 173, 461, 644, 645
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	296, 609, 709, 818
AjnI	CCWGG	1 cut(s)	741
AluBI	AGCT	5 cut(s)	100, 271, 603, 635, 653
AluI	AGCT	5 cut(s)	100, 271, 603, 635, 653
Alw21I	GWGCWC	2 cut(s)	625, 793
Alw26I	GTCTC	1 cut(s)	327
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	2 cut(s)	692, 769
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	4 cut(s)	175, 183, 299, 1147
ApaLI	GTGCAC	1 cut(s)	789
ApeKI	GCWGC	4 cut(s)	97, 100, 632, 1068
ApoI	RAATTY	3 cut(s)	481, 569, 981
AspLEI	GCGC	2 cut(s)	246, 1030
AspS9I	GGNCC	4 cut(s)	300, 563, 667, 941
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	133, 544
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	3 cut(s)	563, 667, 941
BaeGI	GKGCMC	2 cut(s)	35, 793
Bbv12I	GWGCWC	2 cut(s)	625, 793
BbvCI	CCTCAGC	1 cut(s)	843
BbvI	GCAGC	4 cut(s)	87, 109, 644, 1080
BccI	CCATC	6 cut(s)	68, 611, 637, 928, 968, 1116
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	743
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	1079, 1153
BfoI	RGCGCY	1 cut(s)	1031
BfuAI	ACCTGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	8 cut(s)	98, 101, 111, 178, 186, 436, 633, 1069
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	8 cut(s)	99, 102, 112, 179, 187, 437, 634, 1070
Bme1390I	CCNGG	2 cut(s)	67, 743
Bme18I	GGWCC	3 cut(s)	563, 667, 941
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	4 cut(s)	300, 563, 667, 941
BmiI	GGNNCC	3 cut(s)	564, 942, 943
BmrFI	CCNGG	2 cut(s)	67, 743
BmsI	GCATC	2 cut(s)	403, 646
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	843
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	3 cut(s)	191, 647, 931
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	955
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 173, 461, 644, 645
Bse1I	ACTGG	2 cut(s)	550, 798
BseBI	CCWGG	1 cut(s)	743
BseDI	CCNNGG	1 cut(s)	343
BseLI	CCNNNNNNNGG	5 cut(s)	66, 173, 461, 644, 645
BseMII	CTCAG	4 cut(s)	834, 891, 1043, 1152
BseNI	ACTGG	2 cut(s)	550, 798
BseSI	GKGCMC	2 cut(s)	35, 793
BseXI	GCAGC	4 cut(s)	87, 109, 644, 1080
Bsh1236I	CGCG	2 cut(s)	244, 641
BshFI	GGCC	4 cut(s)	177, 185, 301, 1149
BsiHKAI	GWGCWC	2 cut(s)	625, 793
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	67, 956
BslFI	GGGAC	4 cut(s)	119, 443, 576, 954
BslI	CCNNNNNNNGG	5 cut(s)	66, 173, 461, 644, 645
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	4 cut(s)	119, 443, 576, 954
BsnI	GGCC	4 cut(s)	177, 185, 301, 1149
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	35, 625, 793
Bsp1407I	TGTACA	1 cut(s)	1042
Bsp143I	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
Bsp1720I	GCTNAGC	1 cut(s)	900
BspACI	CCGC	8 cut(s)	110, 113, 178, 186, 242, 436, 639, 1071
BspANI	GGCC	4 cut(s)	177, 185, 301, 1149
BspCNI	CTCAG	4 cut(s)	835, 892, 1044, 1151
BspFNI	CGCG	2 cut(s)	244, 641
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	564, 942, 943
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	692, 769
BsrGI	TGTACA	1 cut(s)	1042
BsrI	ACTGG	2 cut(s)	550, 798
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	2 cut(s)	367, 859
Bst6I	CTCTTC	3 cut(s)	124, 516, 537
BstACI	GRCGYC	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	1042
BstC8I	GCNNGC	3 cut(s)	164, 760, 917
BstDEI	CTNAG	6 cut(s)	337, 836, 843, 900, 1052, 1138
BstFNI	CGCG	2 cut(s)	244, 641
BstH2I	RGCGCY	1 cut(s)	1031
BstHHI	GCGC	2 cut(s)	246, 1030
BstKTI	GATC	6 cut(s)	202, 397, 687, 717, 770, 777
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 177, 620, 629, 638
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	2 cut(s)	87, 236
BstSCI	CCNGG	2 cut(s)	65, 741
BstSLI	GKGCMC	2 cut(s)	35, 793
BstUI	CGCG	2 cut(s)	244, 641
BstV1I	GCAGC	4 cut(s)	87, 109, 644, 1080
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	177, 185, 301, 1149
BtgZI	GCGATG	1 cut(s)	656
BtsIMutI	CAGTG	3 cut(s)	485, 689, 791
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	164, 760, 917
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	2 cut(s)	246, 1030
Cfr13I	GGNCC	4 cut(s)	300, 563, 667, 941
Csp6I	GTAC	4 cut(s)	314, 885, 1016, 1043
CviAII	CATG	6 cut(s)	84, 181, 233, 410, 596, 806
CviQI	GTAC	4 cut(s)	314, 885, 1016, 1043
DdeI	CTNAG	6 cut(s)	337, 836, 843, 900, 1052, 1138
DpnI	GATC	6 cut(s)	201, 396, 686, 716, 769, 776
DpnII	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	124, 516, 537
EarI	CTCTTC	3 cut(s)	124, 516, 537
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	3 cut(s)	563, 667, 941
Eco57I	CTGAAG	2 cut(s)	509, 540
Eco88I	CYCGRG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRII	CCWGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	6 cut(s)	87, 184, 236, 413, 599, 809
FaqI	GGGAC	4 cut(s)	119, 443, 576, 954
FatI	CATG	6 cut(s)	83, 180, 232, 409, 595, 805
FauI	CCCGC	2 cut(s)	646, 1064
FauNDI	CATATG	1 cut(s)	1010
Fnu4HI	GCNGC	8 cut(s)	98, 101, 111, 178, 186, 436, 633, 1069
Fsp4HI	GCNGC	8 cut(s)	98, 101, 111, 178, 186, 436, 633, 1069
FspBI	CTAG	2 cut(s)	1079, 1153
GlaI	GCGC	2 cut(s)	245, 1029
GluI	GCNGC	8 cut(s)	98, 101, 111, 178, 186, 436, 633, 1069
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	1031
HaeIII	GGCC	4 cut(s)	177, 185, 301, 1149
HapII	CCGG	2 cut(s)	67, 956
HhaI	GCGC	2 cut(s)	246, 1030
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	87, 184, 236, 413, 599, 809
Hin6I	GCGC	2 cut(s)	244, 1028
HinP1I	GCGC	2 cut(s)	244, 1028
HinfI	GANTC	3 cut(s)	132, 151, 811
HpaII	CCGG	2 cut(s)	67, 956
HphI	GGTGA	2 cut(s)	133, 544
Hpy166II	GTNNAC	4 cut(s)	791, 855, 1016, 1130
Hpy188I	TCNGA	2 cut(s)	277, 991
Hpy188III	TCNNGA	6 cut(s)	197, 330, 410, 419, 815, 910
Hpy8I	GTNNAC	4 cut(s)	791, 855, 1016, 1130
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	367, 859
HpyCH4IV	ACGT	2 cut(s)	54, 970
HpyCH4V	TGCA	9 cut(s)	103, 257, 449, 659, 758, 791, 866, 937, 966
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 177, 620, 629, 638
HpyF3I	CTNAG	6 cut(s)	337, 836, 843, 900, 1052, 1138
HpySE526I	ACGT	2 cut(s)	54, 970
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	87, 184, 236, 413, 599, 809
HspAI	GCGC	2 cut(s)	244, 1028
KflI	GGGWCCC	1 cut(s)	941
Kzo9I	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
LmnI	GCTCC	2 cut(s)	620, 640
Lsp1109I	GCAGC	4 cut(s)	87, 109, 644, 1080
LweI	GCATC	2 cut(s)	403, 646
MaeI	CTAG	2 cut(s)	1079, 1153
MaeII	ACGT	2 cut(s)	54, 970
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	6 cut(s)	201, 396, 686, 716, 769, 776
MboI	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
MboII	GAAGA	7 cut(s)	141, 194, 404, 524, 533, 978, 1121
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	3 cut(s)	35, 625, 793
MluCI	AATT	7 cut(s)	218, 320, 450, 481, 569, 660, 981
MlyI	GAGTC	1 cut(s)	141
MspA1I	CMGCKG	2 cut(s)	100, 1071
MspI	CCGG	2 cut(s)	67, 956
MspR9I	CCNGG	2 cut(s)	67, 743
MunI	CAATTG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	743
MvnI	CGCG	2 cut(s)	244, 641
MwoI	GCNNNNNNNGC	5 cut(s)	168, 177, 620, 629, 638
NciI	CCSGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	1010
NdeII	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
NlaIII	CATG	6 cut(s)	87, 184, 236, 413, 599, 809
NlaIV	GGNNCC	3 cut(s)	564, 942, 943
NspI	RCATGY	2 cut(s)	87, 236
PagI	TCATGA	1 cut(s)	409
PciI	ACATGT	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	151, 811
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	8 cut(s)	99, 102, 112, 179, 187, 437, 634, 1070
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	941
PscI	ACATGT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	3 cut(s)	564, 942, 943
PspPI	GGNCC	4 cut(s)	300, 563, 667, 941
PspPPI	RGGWCCY	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	4 cut(s)	315, 886, 1017, 1044
RsaNI	GTAC	4 cut(s)	314, 885, 1016, 1043
SatI	GCNGC	8 cut(s)	98, 101, 111, 178, 186, 436, 633, 1069
Sau3AI	GATC	6 cut(s)	199, 394, 684, 714, 767, 774
Sau96I	GGNCC	4 cut(s)	300, 563, 667, 941
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	67, 743
SduI	GDGCHC	3 cut(s)	35, 625, 793
SfaNI	GCATC	2 cut(s)	403, 646
SinI	GGWCC	3 cut(s)	563, 667, 941
SmlI	CTYRAG	3 cut(s)	206, 626, 910
SmoI	CTYRAG	3 cut(s)	206, 626, 910
Sse9I	AATT	7 cut(s)	218, 320, 450, 481, 569, 660, 981
SsiI	CCGC	8 cut(s)	110, 113, 178, 186, 242, 436, 639, 1071
SspMI	CTAG	2 cut(s)	1079, 1153
StyD4I	CCNGG	2 cut(s)	65, 741
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	367, 859
TaiI	ACGT	2 cut(s)	57, 973
TaqI	TCGA	2 cut(s)	535, 717
TaqII	GACCGA	1 cut(s)	580
TasI	AATT	7 cut(s)	218, 320, 450, 481, 569, 660, 981
TatI	WGTACW	2 cut(s)	884, 1042
TauI	GCSGC	4 cut(s)	113, 180, 188, 438
TfiI	GAWTC	2 cut(s)	151, 811
TscAI	CASTG	3 cut(s)	492, 696, 798
TseI	GCWGC	4 cut(s)	97, 100, 632, 1068
TspDTI	ATGAA	4 cut(s)	398, 405, 590, 1122
TspGWI	ACGGA	2 cut(s)	214, 331
TspRI	CASTG	3 cut(s)	492, 696, 798
Van91I	CCANNNNNTGG	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	3 cut(s)	563, 667, 941
XapI	RAATTY	3 cut(s)	481, 569, 981
XceI	RCATGY	2 cut(s)	87, 236
XspI	CTAG	2 cut(s)	1079, 1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.