Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

5477790 .. 5483811

Gene Structure 6022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCGCCGACACTCTCGATCTCCTCAAGGACTGCCAATTGTCCGTCAAGCACGTCAATCCTCGCCAGTACGTTGCTAAAATCCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGTCAGGGAATATGAACGGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAGTGAATACCAAAATATGGGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

98

Amino Acids

11.09

Weight (kDa)

5.01

Isoelectric Point (pI)

9.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	40 - 93	5.4e-09	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	285
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	3, 119
AspS9I	GGNCC	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	67
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	5, 121
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	285
BsnI	GGCC	2 cut(s)	5, 121
Bsp143I	GATC	2 cut(s)	19, 214
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 121
BspCNI	CTCAG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	19, 214
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	87, 123
BstKTI	GATC	2 cut(s)	22, 217
BstMBI	GATC	2 cut(s)	19, 214
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	5, 121
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
CciI	TCATGA	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	3 cut(s)	5, 91, 121
CviKI_1	RGCY	3 cut(s)	5, 91, 121
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	87, 123
DpnI	GATC	2 cut(s)	21, 216
DpnII	GATC	2 cut(s)	19, 214
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	160
Eco81I	CCTNAGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	1 cut(s)	233
FaiI	YATR	4 cut(s)	198, 231, 246, 286
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	5, 121
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	233
HpaII	CCGG	1 cut(s)	174
Hpy188III	TCNNGA	3 cut(s)	17, 179, 230
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	54, 72
HpyCH4V	TGCA	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	87, 123
HpySE526I	ACGT	2 cut(s)	54, 72
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	19, 214
LpnPI	CCDG	5 cut(s)	80, 99, 135, 175, 187
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	2 cut(s)	54, 72
MalI	GATC	2 cut(s)	21, 216
MboI	GATC	2 cut(s)	19, 214
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	2 cut(s)	38, 97
MnlI	CCTC	3 cut(s)	35, 72, 129
MseI	TTAA	1 cut(s)	295
MspI	CCGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	38
NdeII	GATC	2 cut(s)	19, 214
NlaIII	CATG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	214
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	19, 214
Sau96I	GGNCC	1 cut(s)	160
SetI	ASST	4 cut(s)	57, 75, 93, 165
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	38, 97
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	57, 75
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	38, 97
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	1 cut(s)	276
TspDTI	ATGAA	2 cut(s)	213, 218
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.