Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

60784881 .. 60794754

Gene Structure 9874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTTGGTGGCAAACCCACCCAAATGCCCCTTCTTTCTTACTCACTCCGTCCCCCTCTCCTCCTCTCCCTCGCCGTCCTTCAAGATCACCTGTTCTGTGGCGGCGGAGGAGAGGAGCGAGATTCGGCTGGGACTACCCAGCAAAGGCCGCTTGGCCGCCCACACTCTCGATCTCCTCAAGGACTGCCAGTTGTCCGTTAAGCATGTCAATCCCTACCAGCACATTGCTAAAATTCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGGGAGTCAAGATCTTATCAATGTTCATGATGCTGTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAACTCACTGAATGAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCACCTGCGATGGGGATAGCTGATGCAATTTTGGGCCTTGTGAGTAGTGGGATAACACTAAAAGAAAACTATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCTACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACTCCATTGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTGAGAGCGATCGGAGGCAGTGGGGTTCTATATTCCCCTTTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCGCAAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

368

Amino Acids

40.2

Weight (kDa)

8.11

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	90 - 260	4.1e-31	ATP phosphoribosyltransferase
HisG_C	PF08029	265 - 349	1.2e-10	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	598
Acc36I	ACCTGC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	806
AciI	CCGC	4 cut(s)	101, 104, 148, 156
AclWI	GGATC	1 cut(s)	714
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	231, 521
AfaI	GTAC	2 cut(s)	907, 996
AfiI	CCNNNNNNNGG	3 cut(s)	143, 413, 596
AgsI	TTSAA	4 cut(s)	82, 266, 661, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	5 cut(s)	241, 448, 566, 605, 881
AluI	AGCT	5 cut(s)	241, 448, 566, 605, 881
Alw21I	GWGCWC	3 cut(s)	577, 745, 841
Alw44I	GTGCAC	2 cut(s)	741, 837
AlwI	GGATC	1 cut(s)	714
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	6 cut(s)	145, 153, 269, 619, 978, 1099
ApaLI	GTGCAC	2 cut(s)	741, 837
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	2 cut(s)	231, 521
AspS9I	GGNCC	6 cut(s)	310, 515, 544, 619, 893, 979
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	79, 496
AsuNHI	GCTAGC	1 cut(s)	448
AvaII	GGWCC	4 cut(s)	310, 515, 544, 893
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	745, 841
Bbv12I	GWGCWC	3 cut(s)	577, 745, 841
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	5 cut(s)	563, 589, 880, 920, 1068
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	337
BfaI	CTAG	2 cut(s)	449, 471
BfuAI	ACCTGC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	4 cut(s)	102, 148, 156, 585
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	4 cut(s)	103, 149, 157, 586
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	4 cut(s)	310, 515, 544, 893
BmgT120I	GGNCC	6 cut(s)	310, 515, 544, 619, 893, 979
BmiI	GGNNCC	3 cut(s)	516, 517, 894
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	355, 598
BmtI	GCTAGC	1 cut(s)	452
Bpu10I	CCTNAGC	2 cut(s)	237, 863
Bpu1102I	GCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	2 cut(s)	161, 599
BpuMI	CCSGG	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 413, 596
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	187, 502, 546
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	2 cut(s)	222, 318
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	3 cut(s)	143, 413, 596
BseMI	GCAATG	2 cut(s)	222, 318
BseMII	CTCAG	3 cut(s)	228, 843, 995
BseNI	ACTGG	3 cut(s)	187, 502, 546
BseRI	GAGGAG	6 cut(s)	49, 52, 122, 127, 164, 690
BseSI	GKGCMC	2 cut(s)	745, 841
BseXI	GCAGC	1 cut(s)	596
BseYI	CCCAGC	2 cut(s)	127, 137
Bsh1285I	CGRYCG	1 cut(s)	1014
BshFI	GGCC	6 cut(s)	147, 155, 271, 621, 980, 1101
BsiEI	CGRYCG	1 cut(s)	1014
BsiHKAI	GWGCWC	3 cut(s)	577, 745, 841
BsiSI	CCGG	2 cut(s)	324, 336
BslFI	GGGAC	4 cut(s)	35, 144, 501, 906
BslI	CCNNNNNNNGG	3 cut(s)	143, 413, 596
BsmFI	GGGAC	4 cut(s)	35, 144, 501, 906
BsnI	GGCC	6 cut(s)	147, 155, 271, 621, 980, 1101
Bsp1286I	GDGCHC	3 cut(s)	577, 745, 841
Bsp1407I	TGTACA	1 cut(s)	994
Bsp143I	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
Bsp1720I	GCTNAGC	1 cut(s)	852
BspACI	CCGC	4 cut(s)	101, 104, 148, 156
BspANI	GGCC	6 cut(s)	147, 155, 271, 621, 980, 1101
BspCNI	CTCAG	3 cut(s)	229, 844, 996
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	516, 517, 894
BspMI	ACCTGC	1 cut(s)	598
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	714
BsrDI	GCAATG	2 cut(s)	222, 318
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	994
BsrI	ACTGG	3 cut(s)	187, 502, 546
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
BssNAI	GTATAC	1 cut(s)	807
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	807
Bst4CI	ACNGT	2 cut(s)	811, 910
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	994
BstC8I	GCNNGC	3 cut(s)	450, 712, 869
BstDEI	CTNAG	5 cut(s)	237, 273, 852, 863, 1004
BstKTI	GATC	6 cut(s)	87, 172, 349, 669, 722, 1014
BstMBI	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
BstMCI	CGRYCG	1 cut(s)	1014
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 572, 581, 590
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	335
BstSLI	GKGCMC	2 cut(s)	745, 841
BstV1I	GCAGC	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	346, 719
BstYI	RGATCY	2 cut(s)	346, 719
BstZ17I	GTATAC	1 cut(s)	807
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	6 cut(s)	147, 155, 271, 621, 980, 1101
BtgZI	GCGATG	1 cut(s)	608
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	3 cut(s)	437, 915, 1027
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	3 cut(s)	450, 712, 869
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	6 cut(s)	310, 515, 544, 619, 893, 979
Csp6I	GTAC	2 cut(s)	906, 995
CviAII	CATG	4 cut(s)	203, 362, 548, 758
CviQI	GTAC	2 cut(s)	906, 995
DdeI	CTNAG	5 cut(s)	237, 273, 852, 863, 1004
DpnI	GATC	6 cut(s)	86, 171, 348, 668, 721, 1013
DpnII	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
EaeI	YGGCCR	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	271
Eco47I	GGWCC	4 cut(s)	310, 515, 544, 893
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	3 cut(s)	515, 893, 979
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	4 cut(s)	206, 365, 551, 761
FalI	AAGNNNNNCTT	4 cut(s)	687, 719, 707, 739
FaqI	GGGAC	4 cut(s)	35, 144, 501, 906
FatI	CATG	4 cut(s)	202, 361, 547, 757
FauNDI	CATATG	1 cut(s)	962
FblI	GTMKAC	1 cut(s)	806
Fnu4HI	GCNGC	4 cut(s)	102, 148, 156, 585
Fsp4HI	GCNGC	4 cut(s)	102, 148, 156, 585
FspBI	CTAG	2 cut(s)	449, 471
GluI	GCNGC	4 cut(s)	102, 148, 156, 585
GsaI	CCCAGC	2 cut(s)	131, 141
HaeIII	GGCC	6 cut(s)	147, 155, 271, 621, 980, 1101
HapII	CCGG	2 cut(s)	324, 336
Hin1II	CATG	4 cut(s)	206, 365, 551, 761
HinfI	GANTC	4 cut(s)	121, 340, 763, 858
HpaII	CCGG	2 cut(s)	324, 336
HphI	GGTGA	2 cut(s)	79, 496
Hpy166II	GTNNAC	4 cut(s)	743, 807, 839, 1082
Hpy188I	TCNGA	1 cut(s)	1016
Hpy188III	TCNNGA	7 cut(s)	82, 167, 236, 329, 344, 362, 767
Hpy8I	GTNNAC	4 cut(s)	743, 807, 839, 1082
HpyAV	CCTTC	2 cut(s)	40, 88
HpyCH4III	ACNGT	2 cut(s)	811, 910
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	8 cut(s)	401, 611, 710, 743, 818, 839, 889, 918
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 572, 581, 590
HpyF3I	CTNAG	5 cut(s)	237, 273, 852, 863, 1004
HpySE526I	ACGT	1 cut(s)	922
Hsp92II	CATG	4 cut(s)	206, 365, 551, 761
KflI	GGGWCCC	1 cut(s)	515
Kzo9I	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
LmnI	GCTCC	2 cut(s)	114, 572
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	2 cut(s)	355, 598
MaeI	CTAG	2 cut(s)	449, 471
MaeII	ACGT	1 cut(s)	922
MalI	GATC	6 cut(s)	86, 171, 348, 668, 721, 1013
MboI	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
MboII	GAAGA	1 cut(s)	1073
MflI	RGATCY	2 cut(s)	346, 719
MhlI	GDGCHC	3 cut(s)	577, 745, 841
MluCI	AATT	4 cut(s)	231, 247, 521, 612
MlyI	GAGTC	2 cut(s)	349, 867
MseI	TTAA	2 cut(s)	198, 432
MslI	CAYNNNNRTG	2 cut(s)	22, 965
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	2 cut(s)	324, 336
MspR9I	CCNGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	4 cut(s)	147, 572, 581, 590
NciI	CCSGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	962
NdeII	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
NheI	GCTAGC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	206, 365, 551, 761
NlaIV	GGNNCC	3 cut(s)	516, 517, 894
NspI	RCATGY	1 cut(s)	206
PagI	TCATGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	121, 763
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	103, 149, 157, 586
Ple19I	CGATCG	1 cut(s)	1014
PleI	GAGTC	2 cut(s)	348, 866
PpsI	GAGTC	2 cut(s)	348, 866
PpuMI	RGGWCCY	2 cut(s)	515, 893
Psp5II	RGGWCCY	2 cut(s)	515, 893
PspFI	CCCAGC	2 cut(s)	127, 137
PspN4I	GGNNCC	3 cut(s)	516, 517, 894
PspPI	GGNCC	6 cut(s)	310, 515, 544, 619, 893, 979
PspPPI	RGGWCCY	2 cut(s)	515, 893
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	346, 719
PvuI	CGATCG	1 cut(s)	1014
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	907, 996
RsaNI	GTAC	2 cut(s)	906, 995
RseI	CAYNNNNRTG	2 cut(s)	22, 965
SaqAI	TTAA	2 cut(s)	198, 432
SatI	GCNGC	4 cut(s)	102, 148, 156, 585
Sau3AI	GATC	6 cut(s)	84, 169, 346, 666, 719, 1011
Sau96I	GGNCC	6 cut(s)	310, 515, 544, 619, 893, 979
SchI	GAGTC	2 cut(s)	349, 867
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	3 cut(s)	577, 745, 841
SfaNI	GCATC	2 cut(s)	355, 598
SinI	GGWCC	4 cut(s)	310, 515, 544, 893
SmiMI	CAYNNNNRTG	2 cut(s)	22, 965
SmlI	CTYRAG	2 cut(s)	176, 578
SmoI	CTYRAG	2 cut(s)	176, 578
Sse9I	AATT	4 cut(s)	231, 247, 521, 612
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	4 cut(s)	101, 104, 148, 156
SspMI	CTAG	2 cut(s)	449, 471
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	811, 910
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	2 cut(s)	168, 669
TasI	AATT	4 cut(s)	231, 247, 521, 612
TatI	WGTACW	2 cut(s)	905, 994
TauI	GCSGC	3 cut(s)	104, 150, 158
TfiI	GAWTC	2 cut(s)	121, 763
Tru1I	TTAA	2 cut(s)	198, 432
Tru9I	TTAA	2 cut(s)	198, 432
TscAI	CASTG	3 cut(s)	444, 915, 1027
TseI	GCWGC	1 cut(s)	584
TspDTI	ATGAA	3 cut(s)	350, 749, 1074
TspGWI	ACGGA	2 cut(s)	37, 184
TspRI	CASTG	3 cut(s)	444, 915, 1027
Van91I	CCANNNNNTGG	1 cut(s)	413
VneI	GTGCAC	2 cut(s)	741, 837
VpaK11BI	GGWCC	4 cut(s)	310, 515, 544, 893
XapI	RAATTY	2 cut(s)	231, 521
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	806
XspI	CTAG	2 cut(s)	449, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.