Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

13685221 .. 13686782

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG087800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTGGCGGCAAACCTACCACCAAAATGTCCCTTGTTTCCCACTGCTCGCTCGGTTCCCATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCGTCTGGGGCTGCCCGGCAAAGGCCGCATCGACGGTGACACTCGCAATTTCCTCAACAATTGTGAATTACCTGTTAAGCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGCTTCTTGTTGCAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGACAGGTATCTATAGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGCAGTTCTTGTTGCTAGCAAGAGATCCTTGCTCGGAAGGAAAAATTCACTAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

259

Amino Acids

28.32

Weight (kDa)

7.58

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	94 - 256	3.3e-22	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	396
AccII	CGCG	1 cut(s)	743
AciI	CCGC	4 cut(s)	8, 154, 298, 394
AclWI	GGATC	2 cut(s)	121, 705
AcsI	RAATTY	3 cut(s)	439, 527, 730
AcvI	CACGTG	1 cut(s)	749
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	4 cut(s)	149, 331, 419, 602
AflIII	ACRYGT	1 cut(s)	746
AgsI	TTSAA	3 cut(s)	266, 278, 550
AluBI	AGCT	4 cut(s)	247, 572, 593, 611
AluI	AGCT	4 cut(s)	247, 572, 593, 611
Alw21I	GWGCWC	1 cut(s)	583
AlwI	GGATC	2 cut(s)	121, 705
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	101, 139, 590
ApoI	RAATTY	3 cut(s)	439, 527, 730
AspS9I	GGNCC	2 cut(s)	521, 625
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	82, 176, 502
AsuNHI	GCTAGC	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	521, 625
BbrPI	CACGTG	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	88, 126, 602
BccI	CCATC	2 cut(s)	569, 595
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BcnI	CCSGG	1 cut(s)	144
BfaI	CTAG	2 cut(s)	702, 737
BfmI	CTRYAG	2 cut(s)	285, 339
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	6 cut(s)	9, 102, 140, 154, 394, 591
BlsI	GCNGC	6 cut(s)	10, 103, 141, 155, 395, 592
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	521, 625
BmgT120I	GGNCC	2 cut(s)	521, 625
BmiI	GGNNCC	2 cut(s)	57, 522
BmrFI	CCNGG	1 cut(s)	144
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	4 cut(s)	113, 165, 361, 760
BmtI	GCTAGC	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 331, 419, 602
Bse1I	ACTGG	2 cut(s)	508, 643
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	2 cut(s)	398, 775
BseLI	CCNNNNNNNGG	4 cut(s)	149, 331, 419, 602
BseNI	ACTGG	2 cut(s)	508, 643
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	88, 126, 602
Bsh1236I	CGCG	1 cut(s)	743
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	4 cut(s)	149, 331, 419, 602
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	126, 352, 710
BspACI	CCGC	4 cut(s)	8, 154, 298, 394
BspANI	GGCC	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	743
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	57, 522
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	2 cut(s)	121, 705
BsrBI	CCGCTC	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	508, 643
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	3 cut(s)	126, 352, 710
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	164, 419
Bst6I	CTCTTC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	749
BstC8I	GCNNGC	3 cut(s)	6, 49, 703
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	398, 775
BstFNI	CGCG	1 cut(s)	743
BstKTI	GATC	3 cut(s)	129, 355, 713
BstMBI	GATC	3 cut(s)	126, 352, 710
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 304, 578, 587, 596
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	285, 339
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	88, 126, 602
BstX2I	RGATCY	3 cut(s)	126, 352, 710
BstYI	RGATCY	3 cut(s)	126, 352, 710
BsuRI	GGCC	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	398, 775
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	6, 49, 703
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	521, 625
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	4 cut(s)	61, 108, 368, 554
CviJI	RGCY	7 cut(s)	139, 153, 247, 507, 572, 593, 611
CviKI_1	RGCY	7 cut(s)	139, 153, 247, 507, 572, 593, 611
CviQI	GTAC	1 cut(s)	636
DpnI	GATC	3 cut(s)	128, 354, 712
DpnII	GATC	3 cut(s)	126, 352, 710
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	521, 625
Eco72I	CACGTG	1 cut(s)	749
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	4 cut(s)	64, 111, 371, 557
FaiI	YATR	9 cut(s)	62, 109, 228, 341, 369, 384, 437, 533, 555
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	4 cut(s)	60, 107, 367, 553
Fnu4HI	GCNGC	6 cut(s)	9, 102, 140, 154, 394, 591
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	6 cut(s)	9, 102, 140, 154, 394, 591
FspBI	CTAG	2 cut(s)	702, 737
GluI	GCNGC	6 cut(s)	9, 102, 140, 154, 394, 591
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	749
Hin1II	CATG	4 cut(s)	64, 111, 371, 557
HinfI	GANTC	1 cut(s)	754
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	3 cut(s)	82, 176, 502
Hpy188I	TCNGA	2 cut(s)	115, 722
Hpy188III	TCNNGA	3 cut(s)	368, 446, 758
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	717
HpyCH4III	ACNGT	2 cut(s)	164, 419
HpyCH4IV	ACGT	2 cut(s)	79, 748
HpyCH4V	TGCA	4 cut(s)	104, 257, 407, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 304, 578, 587, 596
HpySE526I	ACGT	2 cut(s)	79, 748
Hsp92II	CATG	4 cut(s)	64, 111, 371, 557
Kzo9I	GATC	3 cut(s)	126, 352, 710
LmnI	GCTCC	2 cut(s)	578, 598
Lsp1109I	GCAGC	3 cut(s)	88, 126, 602
LweI	GCATC	4 cut(s)	113, 165, 361, 760
MaeI	CTAG	2 cut(s)	702, 737
MaeII	ACGT	2 cut(s)	79, 748
MaeIII	GTNAC	2 cut(s)	75, 164
MalI	GATC	3 cut(s)	128, 354, 712
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	3 cut(s)	126, 352, 710
MboII	GAAGA	2 cut(s)	63, 362
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	3 cut(s)	126, 352, 710
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	8 cut(s)	175, 187, 194, 439, 527, 669, 730, 775
MmeI	TCCRAC	2 cut(s)	93, 747
MnlI	CCTC	8 cut(s)	76, 79, 191, 228, 477, 580, 636, 659
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	743
MwoI	GCNNNNNNNGC	5 cut(s)	153, 304, 578, 587, 596
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	126, 352, 710
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	4 cut(s)	64, 111, 371, 557
NlaIV	GGNNCC	2 cut(s)	57, 522
NmuCI	GTSAC	2 cut(s)	75, 164
PagI	TCATGA	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	754
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	6 cut(s)	10, 103, 141, 155, 395, 592
PmaCI	CACGTG	1 cut(s)	749
PmlI	CACGTG	1 cut(s)	749
Ppu21I	YACGTR	1 cut(s)	749
PpuMI	RGGWCCY	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	521
PspCI	CACGTG	1 cut(s)	749
PspN4I	GGNNCC	2 cut(s)	57, 522
PspPI	GGNCC	2 cut(s)	521, 625
PspPPI	RGGWCCY	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	3 cut(s)	126, 352, 710
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	6 cut(s)	9, 102, 140, 154, 394, 591
Sau3AI	GATC	3 cut(s)	126, 352, 710
Sau96I	GGNCC	2 cut(s)	521, 625
ScaI	AGTACT	1 cut(s)	637
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	4 cut(s)	113, 165, 361, 760
SfcI	CTRYAG	2 cut(s)	285, 339
SinI	GGWCC	2 cut(s)	521, 625
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	8 cut(s)	175, 187, 194, 439, 527, 669, 730, 775
SsiI	CCGC	4 cut(s)	8, 154, 298, 394
SspMI	CTAG	2 cut(s)	702, 737
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	164, 419
TaiI	ACGT	2 cut(s)	82, 751
TaqI	TCGA	2 cut(s)	159, 759
TasI	AATT	8 cut(s)	175, 187, 194, 439, 527, 669, 730, 775
TatI	WGTACW	1 cut(s)	635
TauI	GCSGC	3 cut(s)	11, 156, 396
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	75, 164
TseI	GCWGC	3 cut(s)	101, 139, 590
Tsp45I	GTSAC	2 cut(s)	75, 164
TspDTI	ATGAA	3 cut(s)	356, 363, 548
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	521, 625
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	3 cut(s)	439, 527, 730
XspI	CTAG	2 cut(s)	702, 737
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.