Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

13473201 .. 13473596

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAACCATAAACTCAAATACTCAACCAGTTGGTTATTCAACATGCAGGGCCCGACTGTAAGTCCAGTTTATCGCAAAGGTGATGATGGGAAAGAAACAGTTGATTACTATGCCATTATCATATGTCTACCGGAAGAGGCACCCTACGAGTCTGTAAAACAACTGAGATCGATTGGAGGCAGTGGGGTTATAGTTATCCCTTCTTCGACTTACATTTTTGATGAAGAAACTCCTCCAAGATGGCCTGAACTTCTCTCAAACCTTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

90

Amino Acids

10.14

Weight (kDa)

4.97

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG_C	PF08029	11 - 67	1.1e-06	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	60
AoxI	GGCC	2 cut(s)	49, 242
ApaI	GGGCCC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	49, 50
AsuHPI	GGTGA	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	53
BccI	CCATC	2 cut(s)	80, 234
BfaI	CTAG	1 cut(s)	271
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	49, 50
BmiI	GGNNCC	2 cut(s)	51, 141
Bsa29I	ATCGAT	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	27, 65
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	27, 65
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	53
BshFI	GGCC	2 cut(s)	51, 244
BshNI	GGYRCC	1 cut(s)	139
BshVI	ATCGAT	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	2 cut(s)	51, 244
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	51, 244
BspCNI	CTCAG	1 cut(s)	156
BspDI	ATCGAT	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	51, 141
BspT107I	GGYRCC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	27, 65
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	58, 100
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	51, 244
BsuTUI	ATCGAT	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	49, 50
ClaI	ATCGAT	1 cut(s)	170
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	2 cut(s)	51, 244
CviKI_1	RGCY	2 cut(s)	51, 244
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	46
FaiI	YATR	6 cut(s)	9, 44, 111, 122, 124, 191
FatI	CATG	1 cut(s)	42
FauNDI	CATATG	1 cut(s)	122
FblI	GTMKAC	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	51, 244
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	58, 100
HpyCH4V	TGCA	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	32, 40, 78, 144, 258
MaeI	CTAG	1 cut(s)	271
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	3 cut(s)	146, 195, 236
MhlI	GDGCHC	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	130, 170, 243
MspI	CCGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	122
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	51, 141
NspI	RCATGY	1 cut(s)	46
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	51, 141
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	49, 50
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	2 cut(s)	49, 50
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	2 cut(s)	82, 264
SgeI	CNNG	9 cut(s)	39, 55, 59, 64, 77, 143, 160, 249, 257
SspMI	CTAG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	58, 100
TaqI	TCGA	2 cut(s)	170, 206
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	17, 237
TspRI	CASTG	1 cut(s)	187
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.