Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

14287795 .. 14289018

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCGTACCCGATTCTACTAGCGATTGTCAACTCCTTCAAAAGATCCAGCCGGCATCGCCGAGCTTCTCAGCGACGAGGACCGTCGGCTTGGCGTCGAGCCTGGCCGCGGAGAGCACGACGAGGAGTTTCGGCGCTGCGATGGCAAGAGCCGTCATCGTGGGCGTCCTACTGGAGGGGGAGGAACCTCTCAATTGAAGCTTTTGATCCAATTCAGGTTCCCAAAAATGCTGGCGGCAAACCGACCACCAAAATTAATGTCCCTTGTTTAATTCCCACAGCTCGCTCGGTTCCCATGTCCTTCTCTTCGTCACGTTTCCAAATCACCAGTTGTGCTGCATCGTGGTTGGAAAGGAACGAGATCCGTCTGGGGCTGCCCAGCAAAGGCCGCATCAGCTGTGACACTTGCAATTTCCTCAACAATTGTAAACTACCTGTTAAGCAAGACAATCATCGTCAATATGTTGCTCAAATCCCACAGCTTCTTGTTGCAGTTATTGAAGTGTGGTTTCAAAGAGCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTTGGTTTAGATACCGTCTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTACATGATGCTCTTGGGTATGGGGAATGCCGCTTATCCCTTGCAATACCAAACTGTGGAACTTTTGAGAATATAAATTCTCTGGACGAGTTAACACAAATGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

242

Amino Acids

27.27

Weight (kDa)

9.76

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	172 - 235	3.2e-09	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccII	CGCG	1 cut(s)	109
AciI	CCGC	6 cut(s)	107, 109, 234, 388, 532, 652
AclWI	GGATC	3 cut(s)	39, 200, 355
AcoI	YGGCCR	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	590, 697
AcyI	GRCGYC	2 cut(s)	94, 164
AfaI	GTAC	2 cut(s)	8, 624
AfiI	CCNNNNNNNGG	4 cut(s)	108, 174, 383, 677
AgsI	TTSAA	4 cut(s)	40, 197, 500, 512
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	6 cut(s)	65, 200, 281, 396, 481, 518
AluI	AGCT	6 cut(s)	65, 200, 281, 396, 481, 518
Alw21I	GWGCWC	1 cut(s)	118
AlwI	GGATC	3 cut(s)	39, 200, 355
AoxI	GGCC	2 cut(s)	104, 385
ApeKI	GCWGC	3 cut(s)	136, 335, 373
ApoI	RAATTY	2 cut(s)	590, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	123, 322, 360
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	137
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	7 cut(s)	107, 137, 235, 336, 374, 388, 652
BlsI	GCNGC	7 cut(s)	108, 138, 236, 337, 375, 389, 653
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	185, 219, 291
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	4 cut(s)	64, 347, 399, 619
BpmI	CTGGAG	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	94, 164
BsaJI	CCNNGG	2 cut(s)	107, 559
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 174, 383, 677
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	176, 327
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	107, 559
BseLI	CCNNNNNNNGG	4 cut(s)	108, 174, 383, 677
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	176, 327
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	123, 322, 360
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	106, 387
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	108, 174, 383, 677
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	106, 387
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	44, 205, 360, 610
BspACI	CCGC	6 cut(s)	107, 109, 234, 388, 532, 652
BspANI	GGCC	2 cut(s)	106, 387
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	3 cut(s)	185, 219, 291
BspPI	GGATC	3 cut(s)	39, 200, 355
BsrFI	RCCGGY	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	176, 327
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	107, 559
BssMI	GATC	4 cut(s)	44, 205, 360, 610
BssNI	GRCGYC	2 cut(s)	94, 164
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	84, 583, 677
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	2 cut(s)	94, 164
BstAUI	TGTACA	1 cut(s)	622
BstC8I	GCNNGC	3 cut(s)	53, 232, 283
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	107
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	47, 208, 363, 613
BstMBI	GATC	4 cut(s)	44, 205, 360, 610
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 142, 387, 393, 538
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	123, 322, 360
BstX2I	RGATCY	3 cut(s)	44, 360, 610
BstYI	RGATCY	3 cut(s)	44, 360, 610
BsuRI	GGCC	2 cut(s)	106, 387
BtgI	CCRYGG	1 cut(s)	107
BtgZI	GCGATG	2 cut(s)	41, 154
Cac8I	GCNNGC	3 cut(s)	53, 232, 283
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	80
Cfr42I	CCGCGG	1 cut(s)	110
CseI	GACGC	2 cut(s)	83, 153
Csp6I	GTAC	2 cut(s)	7, 623
CviAII	CATG	2 cut(s)	295, 626
CviQI	GTAC	2 cut(s)	7, 623
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	4 cut(s)	46, 207, 362, 612
DpnII	GATC	4 cut(s)	44, 205, 360, 610
EaeI	YGGCCR	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	2 cut(s)	298, 629
FaiI	YATR	6 cut(s)	296, 462, 566, 627, 642, 695
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	294, 625
Fnu4HI	GCNGC	7 cut(s)	107, 137, 235, 336, 374, 388, 652
Fsp4HI	GCNGC	7 cut(s)	107, 137, 235, 336, 374, 388, 652
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	7 cut(s)	107, 137, 235, 336, 374, 388, 652
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	106, 387
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	2 cut(s)	83, 153
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	2 cut(s)	94, 164
Hin1II	CATG	2 cut(s)	298, 629
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	2 cut(s)	31, 714
HindII	GTYRAC	2 cut(s)	31, 714
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	714
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	3 cut(s)	31, 428, 714
Hpy188III	TCNNGA	1 cut(s)	704
Hpy8I	GTNNAC	3 cut(s)	31, 428, 714
Hpy99I	CGWCG	4 cut(s)	78, 88, 99, 123
HpyAV	CCTTC	2 cut(s)	46, 310
HpyCH4III	ACNGT	3 cut(s)	84, 583, 677
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	4 cut(s)	338, 408, 491, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 142, 387, 393, 538
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	2 cut(s)	94, 164
Hsp92II	CATG	2 cut(s)	298, 629
HspAI	GCGC	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
KspAI	GTTAAC	1 cut(s)	714
KspI	CCGCGG	1 cut(s)	110
Kzo9I	GATC	4 cut(s)	44, 205, 360, 610
Lsp1109I	GCAGC	3 cut(s)	123, 322, 360
LweI	GCATC	4 cut(s)	64, 347, 399, 619
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	2 cut(s)	309, 398
MalI	GATC	4 cut(s)	46, 207, 362, 612
MboI	GATC	4 cut(s)	44, 205, 360, 610
MboII	GAAGA	2 cut(s)	297, 620
MfeI	CAATTG	2 cut(s)	192, 421
MflI	RGATCY	3 cut(s)	44, 360, 610
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	8 cut(s)	192, 210, 252, 270, 409, 421, 590, 697
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	6 cut(s)	71, 116, 168, 174, 197, 425
MroNI	GCCGGC	1 cut(s)	51
MseI	TTAA	5 cut(s)	255, 269, 438, 713, 727
MspA1I	CMGCKG	2 cut(s)	109, 396
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	2 cut(s)	192, 421
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	5 cut(s)	57, 142, 387, 393, 538
NaeI	GCCGGC	1 cut(s)	53
NdeII	GATC	4 cut(s)	44, 205, 360, 610
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	298, 629
NlaIV	GGNNCC	3 cut(s)	185, 219, 291
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	309, 398
PctI	GAATGC	1 cut(s)	653
PdiI	GCCGGC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	7 cut(s)	108, 138, 236, 337, 375, 389, 653
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	185, 219, 291
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	44, 360, 610
PvuII	CAGCTG	1 cut(s)	396
RsaI	GTAC	2 cut(s)	8, 624
RsaNI	GTAC	2 cut(s)	7, 623
SacII	CCGCGG	1 cut(s)	110
SaqAI	TTAA	5 cut(s)	255, 269, 438, 713, 727
SatI	GCNGC	7 cut(s)	107, 137, 235, 336, 374, 388, 652
Sau3AI	GATC	4 cut(s)	44, 205, 360, 610
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	4 cut(s)	64, 347, 399, 619
SfcI	CTRYAG	1 cut(s)	519
Sfr303I	CCGCGG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	8 cut(s)	192, 210, 252, 270, 409, 421, 590, 697
SsiI	CCGC	6 cut(s)	107, 109, 234, 388, 532, 652
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	3 cut(s)	84, 583, 677
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	97
TasI	AATT	8 cut(s)	192, 210, 252, 270, 409, 421, 590, 697
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	4 cut(s)	109, 237, 390, 654
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	5 cut(s)	255, 269, 438, 713, 727
Tru9I	TTAA	5 cut(s)	255, 269, 438, 713, 727
TseFI	GTSAC	2 cut(s)	309, 398
TseI	GCWGC	3 cut(s)	136, 335, 373
Tsp45I	GTSAC	2 cut(s)	309, 398
TspDTI	ATGAA	1 cut(s)	621
TspGWI	ACGGA	1 cut(s)	353
Van91I	CCANNNNNTGG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	172
XapI	RAATTY	2 cut(s)	590, 697
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.