Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

60777101 .. 60778597

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAAAAGTGCACTTGAAACGACACATGAGATTCTGAAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAACTAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATCACCATACATGTACCAAAAGATACCCTCTACAAGTCTGTACAACAACTGAGAGCGGGCTCGGCAGCATGCGGCGCGGCATGTCGGCAGCATGAGGCGCGGCATGTCGGCGAGATGCTTGCGGCCGTCGACGCATTAGTCGTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

123

Amino Acids

13.26

Weight (kDa)

8.48

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG_C	PF08029	21 - 96	3.3e-07	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	278
AccI	GTMKAC	2 cut(s)	74, 351
AccII	CGCG	2 cut(s)	299, 322
AciI	CCGC	5 cut(s)	278, 294, 299, 322, 344
AcoI	YGGCCR	1 cut(s)	345
AfaI	GTAC	3 cut(s)	175, 237, 264
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	17
AhlI	ACTAGT	1 cut(s)	101
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw21I	GWGCWC	2 cut(s)	13, 109
Alw44I	GTGCAC	2 cut(s)	9, 105
AoxI	GGCC	1 cut(s)	345
ApaLI	GTGCAC	2 cut(s)	9, 105
ApeKI	GCWGC	2 cut(s)	287, 310
AspLEI	GCGC	2 cut(s)	299, 322
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	2 cut(s)	13, 109
BanII	GRGCYC	1 cut(s)	284
Bbv12I	GWGCWC	2 cut(s)	13, 109
BbvI	GCAGC	2 cut(s)	299, 322
BccI	CCATC	3 cut(s)	148, 188, 230
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	6 cut(s)	288, 295, 300, 311, 323, 345
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	6 cut(s)	289, 296, 301, 312, 324, 346
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	162, 163
BmsI	GCATC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	111, 263
BseSI	GKGCMC	2 cut(s)	13, 109
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	299, 322
Bsh1236I	CGCG	2 cut(s)	299, 322
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	13, 109
BslFI	GGGAC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	3 cut(s)	13, 109, 284
Bsp1407I	TGTACA	1 cut(s)	262
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	5 cut(s)	278, 294, 299, 322, 344
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	112, 264
BspFNI	CGCG	2 cut(s)	299, 322
BspLI	GGNNCC	2 cut(s)	162, 163
BsrBI	CCGCTC	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	262
BssNAI	GTATAC	1 cut(s)	75
Bst1107I	GTATAC	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	79, 178
BstAUI	TGTACA	1 cut(s)	262
BstC8I	GCNNGC	4 cut(s)	137, 280, 292, 342
BstDEI	CTNAG	3 cut(s)	120, 131, 272
BstFNI	CGCG	2 cut(s)	299, 322
BstHHI	GCGC	2 cut(s)	299, 322
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 296, 319, 353
BstNSI	RCATGY	4 cut(s)	236, 294, 306, 329
BstSLI	GKGCMC	2 cut(s)	13, 109
BstUI	CGCG	2 cut(s)	299, 322
BstV1I	GCAGC	2 cut(s)	299, 322
BstZ17I	GTATAC	1 cut(s)	75
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	137, 280, 292, 342
CfoI	GCGC	2 cut(s)	299, 322
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	3 cut(s)	174, 236, 263
CviAII	CATG	6 cut(s)	26, 233, 291, 303, 314, 326
CviJI	RGCY	6 cut(s)	119, 135, 139, 149, 282, 347
CviKI_1	RGCY	6 cut(s)	119, 135, 139, 149, 282, 347
CviQI	GTAC	3 cut(s)	174, 236, 263
DdeI	CTNAG	3 cut(s)	120, 131, 272
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
EclXI	CGGCCG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	6 cut(s)	29, 236, 294, 306, 317, 329
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	6 cut(s)	25, 232, 290, 302, 313, 325
FauI	CCCGC	1 cut(s)	271
FblI	GTMKAC	2 cut(s)	74, 351
Fnu4HI	GCNGC	6 cut(s)	288, 295, 300, 311, 323, 345
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	6 cut(s)	288, 295, 300, 311, 323, 345
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	2 cut(s)	298, 321
GluI	GCNGC	6 cut(s)	288, 295, 300, 311, 323, 345
HaeIII	GGCC	1 cut(s)	347
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	2 cut(s)	299, 322
Hin1II	CATG	6 cut(s)	29, 236, 294, 306, 317, 329
Hin6I	GCGC	2 cut(s)	297, 320
HinP1I	GCGC	2 cut(s)	297, 320
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	31, 126
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	4 cut(s)	11, 75, 107, 352
Hpy188I	TCNGA	1 cut(s)	36
Hpy8I	GTNNAC	4 cut(s)	11, 75, 107, 352
Hpy99I	CGWCG	2 cut(s)	353, 356
HpyCH4III	ACNGT	2 cut(s)	79, 178
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	5 cut(s)	11, 86, 107, 157, 186
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 296, 319, 353
HpyF3I	CTNAG	3 cut(s)	120, 131, 272
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	6 cut(s)	29, 236, 294, 306, 317, 329
HspAI	GCGC	2 cut(s)	297, 320
KflI	GGGWCCC	1 cut(s)	161
LpnPI	CCDG	3 cut(s)	135, 143, 149
Lsp1109I	GCAGC	2 cut(s)	299, 322
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	190
MbiI	CCGCTC	1 cut(s)	278
MhlI	GDGCHC	3 cut(s)	13, 109, 284
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	40, 58, 87, 260, 310
MvnI	CGCG	2 cut(s)	299, 322
MwoI	GCNNNNNNNGC	4 cut(s)	284, 296, 319, 353
NlaIII	CATG	6 cut(s)	29, 236, 294, 306, 317, 329
NlaIV	GGNNCC	2 cut(s)	162, 163
NmeAIII	GCCGAG	1 cut(s)	263
NspI	RCATGY	4 cut(s)	236, 294, 306, 329
PaeI	GCATGC	1 cut(s)	294
PciI	ACATGT	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	6 cut(s)	289, 296, 301, 312, 324, 346
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	161
PscI	ACATGT	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	162, 163
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
RsaI	GTAC	3 cut(s)	175, 237, 264
RsaNI	GTAC	3 cut(s)	174, 236, 263
SalI	GTCGAC	1 cut(s)	350
SatI	GCNGC	6 cut(s)	288, 295, 300, 311, 323, 345
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	3 cut(s)	13, 109, 284
SetI	ASST	2 cut(s)	151, 193
SfaNI	GCATC	1 cut(s)	327
SgrDI	CGTCGACG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	101
SphI	GCATGC	1 cut(s)	294
SsiI	CCGC	5 cut(s)	278, 294, 299, 322, 344
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	79, 178
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	351
TatI	WGTACW	2 cut(s)	173, 262
TauI	GCSGC	4 cut(s)	297, 302, 325, 347
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	2 cut(s)	287, 310
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	183
VneI	GTGCAC	2 cut(s)	9, 105
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	4 cut(s)	236, 294, 306, 329
XmiI	GTMKAC	2 cut(s)	74, 351
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.