Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

58145066 .. 58147227

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCGTCTGGGGCTGCCCGGCAAAGGCCGCATCGACGGTGACACTCGCAATTTCCTCAACAATTGTGAATTACCTGTTAAGCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGCTTCTTGTTGCAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTTTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGGCCCGACTGTAAGTCCAGTTTATCGCAAAGGTGATGATGGGAAAGAAACAGTTGATTACTATGCCATTATCATATGTCTACCGGAAGAGGCACCCTACGAGTCTGTAAAACAACTGAGATCGATTGGAGGCAGTGGGGTTATAGTTATCCCTTCTTCGACTTACATTTTTGATGAAGAAACTCCTCCAAGATGGCCTGAACTTCTCTCAAACCTTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

291

Amino Acids

31.87

Weight (kDa)

4.84

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	74 - 209	1.8e-26	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	742
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	730
AciI	CCGC	3 cut(s)	94, 238, 358
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	3 cut(s)	296, 403, 491
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	3 cut(s)	89, 383, 566
AgsI	TTSAA	3 cut(s)	206, 218, 514
AhdI	GACNNNNNGTC	1 cut(s)	663
AluBI	AGCT	4 cut(s)	187, 536, 557, 575
AluI	AGCT	4 cut(s)	187, 536, 557, 575
Alw21I	GWGCWC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	61
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	3 cut(s)	91, 652, 845
ApaI	GGGCCC	1 cut(s)	656
ApeKI	GCWGC	3 cut(s)	41, 79, 554
ApoI	RAATTY	3 cut(s)	296, 403, 491
AspS9I	GGNCC	4 cut(s)	485, 589, 652, 653
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	22, 116, 466, 695
AvaII	GGWCC	2 cut(s)	485, 589
BaeGI	GKGCMC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	742
BanII	GRGCYC	1 cut(s)	656
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	3 cut(s)	28, 66, 566
BccI	CCATC	4 cut(s)	533, 559, 683, 837
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	874
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	5 cut(s)	42, 80, 94, 358, 555
BlsI	GCNGC	5 cut(s)	43, 81, 95, 359, 556
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	485, 589
BmeRI	GACNNNNNGTC	1 cut(s)	663
BmgT120I	GGNCC	4 cut(s)	485, 589, 652, 653
BmiI	GGNNCC	3 cut(s)	486, 654, 744
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	3 cut(s)	53, 105, 325
BmuI	ACTGGG	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	773
BsaJI	CCNNGG	2 cut(s)	265, 865
BsaWI	WCCGGW	1 cut(s)	733
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 383, 566
Bse1I	ACTGG	3 cut(s)	472, 607, 668
BseCI	ATCGAT	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	265, 865
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	3 cut(s)	89, 383, 566
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	3 cut(s)	472, 607, 668
BseRI	GAGGAG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	28, 66, 566
BshFI	GGCC	3 cut(s)	93, 654, 847
BshNI	GGYRCC	1 cut(s)	742
BshVI	ATCGAT	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	84, 734
BslI	CCNNNNNNNGG	3 cut(s)	89, 383, 566
BsnI	GGCC	3 cut(s)	93, 654, 847
Bsp120I	GGGCCC	1 cut(s)	652
Bsp1286I	GDGCHC	2 cut(s)	547, 656
Bsp143I	GATC	3 cut(s)	66, 316, 770
BspACI	CCGC	3 cut(s)	94, 238, 358
BspANI	GGCC	3 cut(s)	93, 654, 847
BspCNI	CTCAG	1 cut(s)	759
BspDI	ATCGAT	1 cut(s)	773
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	486, 654, 744
BspPI	GGATC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	742
BsrBI	CCGCTC	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	472, 607, 668
BssECI	CCNNGG	2 cut(s)	265, 865
BssMI	GATC	3 cut(s)	66, 316, 770
BssT1I	CCWWGG	2 cut(s)	265, 865
Bst4CI	ACNGT	5 cut(s)	104, 289, 383, 661, 703
Bst6I	CTCTTC	2 cut(s)	16, 732
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	767
BstF5I	GGATG	1 cut(s)	362
BstKTI	GATC	3 cut(s)	69, 319, 773
BstMBI	GATC	3 cut(s)	66, 316, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 244, 542, 551, 560
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	656
BstV1I	GCAGC	3 cut(s)	28, 66, 566
BstX2I	RGATCY	2 cut(s)	66, 316
BstYI	RGATCY	2 cut(s)	66, 316
Bsu15I	ATCGAT	1 cut(s)	773
BsuRI	GGCC	3 cut(s)	93, 654, 847
BsuTUI	ATCGAT	1 cut(s)	773
BtgZI	GCGATG	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	362
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	1 cut(s)	790
CaiI	CAGNNNCTG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	4 cut(s)	485, 589, 652, 653
ClaI	ATCGAT	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	3 cut(s)	48, 332, 518
CviJI	RGCY	9 cut(s)	79, 93, 187, 471, 536, 557, 575, 654, 847
CviKI_1	RGCY	9 cut(s)	79, 93, 187, 471, 536, 557, 575, 654, 847
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	1 cut(s)	767
DpnI	GATC	3 cut(s)	68, 318, 772
DpnII	GATC	3 cut(s)	66, 316, 770
DriI	GACNNNNNGTC	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	16, 732
Eam1105I	GACNNNNNGTC	1 cut(s)	663
EarI	CTCTTC	2 cut(s)	16, 732
Eco130I	CCWWGG	2 cut(s)	265, 865
Eco24I	GRGCYC	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	485, 589
EcoO109I	RGGNCCY	2 cut(s)	485, 652
EcoT14I	CCWWGG	2 cut(s)	265, 865
EcoT38I	GRGCYC	1 cut(s)	656
ErhI	CCWWGG	2 cut(s)	265, 865
FaeI	CATG	3 cut(s)	51, 335, 521
FatI	CATG	3 cut(s)	47, 331, 517
FauNDI	CATATG	1 cut(s)	725
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	5 cut(s)	42, 80, 94, 358, 555
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	5 cut(s)	42, 80, 94, 358, 555
FspBI	CTAG	1 cut(s)	874
GluI	GCNGC	5 cut(s)	42, 80, 94, 358, 555
HaeIII	GGCC	3 cut(s)	93, 654, 847
HapII	CCGG	2 cut(s)	84, 734
Hin1II	CATG	3 cut(s)	51, 335, 521
HinfI	GANTC	1 cut(s)	752
HpaII	CCGG	2 cut(s)	84, 734
HphI	GGTGA	4 cut(s)	22, 116, 466, 695
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	332, 410
Hpy8I	GTNNAC	1 cut(s)	731
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	813
HpyCH4III	ACNGT	5 cut(s)	104, 289, 383, 661, 703
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	44, 197, 371
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 244, 542, 551, 560
HpyF3I	CTNAG	1 cut(s)	767
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	51, 335, 521
Kzo9I	GATC	3 cut(s)	66, 316, 770
LmnI	GCTCC	2 cut(s)	542, 562
Lsp1109I	GCAGC	3 cut(s)	28, 66, 566
LweI	GCATC	3 cut(s)	53, 105, 325
MaeI	CTAG	1 cut(s)	874
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	15, 104
MalI	GATC	3 cut(s)	68, 318, 772
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	3 cut(s)	66, 316, 770
MboII	GAAGA	5 cut(s)	3, 326, 749, 798, 839
MfeI	CAATTG	1 cut(s)	127
MflI	RGATCY	2 cut(s)	66, 316
MhlI	GDGCHC	2 cut(s)	547, 656
MluCI	AATT	7 cut(s)	115, 127, 134, 296, 403, 491, 633
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	1 cut(s)	33
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	84, 734
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	127
MwoI	GCNNNNNNNGC	5 cut(s)	93, 244, 542, 551, 560
NciI	CCSGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	725
NdeII	GATC	3 cut(s)	66, 316, 770
NlaIII	CATG	3 cut(s)	51, 335, 521
NlaIV	GGNNCC	3 cut(s)	486, 654, 744
NmuCI	GTSAC	2 cut(s)	15, 104
PagI	TCATGA	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	5 cut(s)	43, 81, 95, 359, 556
PleI	GAGTC	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	760
PpuMI	RGGWCCY	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	485
PspN4I	GGNNCC	3 cut(s)	486, 654, 744
PspOMI	GGGCCC	1 cut(s)	652
PspPI	GGNCC	4 cut(s)	485, 589, 652, 653
PspPPI	RGGWCCY	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	66, 316
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	5 cut(s)	42, 80, 94, 358, 555
Sau3AI	GATC	3 cut(s)	66, 316, 770
Sau96I	GGNCC	4 cut(s)	485, 589, 652, 653
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	547, 656
SfaNI	GCATC	3 cut(s)	53, 105, 325
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	485, 589
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	7 cut(s)	115, 127, 134, 296, 403, 491, 633
SsiI	CCGC	3 cut(s)	94, 238, 358
SspMI	CTAG	1 cut(s)	874
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	2 cut(s)	265, 865
TaaI	ACNGT	5 cut(s)	104, 289, 383, 661, 703
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	3 cut(s)	99, 773, 809
TasI	AATT	7 cut(s)	115, 127, 134, 296, 403, 491, 633
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	2 cut(s)	96, 360
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	15, 104
TseI	GCWGC	3 cut(s)	41, 79, 554
Tsp45I	GTSAC	2 cut(s)	15, 104
TspDTI	ATGAA	4 cut(s)	320, 327, 512, 840
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	790
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	485, 589
XapI	RAATTY	3 cut(s)	296, 403, 491
XmiI	GTMKAC	1 cut(s)	730
XspI	CTAG	1 cut(s)	874
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.