Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003076.1

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

64248 .. 65313

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003076.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgaaagaaaatggattgaaccatgtgagtttttccacagctgatggagcacttgaggcagctcctgcgatggggatagctgatgtgattttggaccttgtgagtactgggaggacactaaaagaaaacaagggaggaattgtgttgagaagtcagggcccgactgtaagtccagtttatcgcaaaggtgatgatgggaaagaaacagttgattactatgccattatcatatgtctaccggaagaggcaccctacgagtctgtaaaacaactgagatcgattggaggcagtggggttatagttatcccttcttcgacttacatttttgatgaagaaactcctccaagatggcctgaacttctctcaaaccttggtctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

126

Amino Acids

13.51

Weight (kDa)

4.69

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	235
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	19
AhdI	GACNNNNNGTC	1 cut(s)	168
AluBI	AGCT	3 cut(s)	41, 62, 80
AluI	AGCT	3 cut(s)	41, 62, 80
Alw21I	GWGCWC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	157, 350
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	94, 157, 158
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	4 cut(s)	38, 64, 188, 342
BfaI	CTAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	94
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	94, 157, 158
BmiI	GGNNCC	2 cut(s)	159, 249
BmrI	ACTGGG	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	112, 173
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	112, 173
BseRI	GAGGAG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	2 cut(s)	159, 352
BshNI	GGYRCC	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	71
BsnI	GGCC	2 cut(s)	159, 352
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	52, 161
Bsp143I	GATC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	159, 352
BspCNI	CTCAG	1 cut(s)	264
BspDI	ATCGAT	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	159, 249
BspT107I	GGYRCC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	112, 173
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	166, 208
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 65
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	71
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	159, 352
BsuTUI	ATCGAT	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	94, 157, 158
ClaI	ATCGAT	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	5 cut(s)	41, 62, 80, 159, 352
CviKI_1	RGCY	5 cut(s)	41, 62, 80, 159, 352
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	237
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	26
FaiI	YATR	5 cut(s)	24, 219, 230, 232, 299
FatI	CATG	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	159, 352
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	1 cut(s)	26
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	2 cut(s)	166, 208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 65
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	47, 67
LpnPI	CCDG	6 cut(s)	78, 93, 140, 186, 252, 366
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	379
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	254, 303, 344
MhlI	GDGCHC	2 cut(s)	52, 161
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	6 cut(s)	49, 105, 128, 238, 278, 351
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 65
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	2 cut(s)	159, 249
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	159, 249
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	94, 157, 158
PstNI	CAGNNNCTG	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	3 cut(s)	94, 157, 158
ScaI	AGTACT	1 cut(s)	106
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	52, 161
SetI	ASST	6 cut(s)	43, 64, 82, 99, 190, 372
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	166, 208
TaqI	TCGA	2 cut(s)	278, 314
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	104
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	17, 345
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	1 cut(s)	379
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.