Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

60715461 .. 60721801

Gene Structure 6341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTTGGCGGCAAACCCACCCAAATGCTCCTTCTTTCTCACTCACTCCCTTCTCCCCTCCTCCTCTCCCTCGCCGTCCTTCAAAATCACCTGCTCTGCGGCGGCGTCGGAGAGGAGTGAGATTCGGCTGGGACTGCCCAGCAAAGGCCGCATGGCCGCCGACACTCTCGATCTCCTCAAGGACTGCCAATTGTCCGTCAAGCACGTCAATCCTCGCCAGTACGTTGCTAAAATCCCTGAGGTGATTCCCTCCCTCACTCTATCTTCAACATTTTTTATTCCTCTTTTGCATGTTGCACCCAAATTCAATTTTTTTTTGGGATTGGTGCAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGTCAGTGAATATGGACGGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAACTCACTGAATGAGCTAGCAAAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGCAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGAATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGGAGGAGTTGTGCTGCGAAGTCAATTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTGGTTGCAAATATGAGGGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACGATAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATTGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACGACAACTGAGAGCGATCGGAGGCAGTGGGGTTCTATATTCCCCATTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCGCAAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

400

Amino Acids

43.65

Weight (kDa)

8.3

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	120 - 295	1.7e-33	ATP phosphoribosyltransferase
HisG_C	PF08029	313 - 381	6.9e-09	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	521
AciI	CCGC	5 cut(s)	8, 98, 101, 148, 156
AclWI	GGATC	1 cut(s)	819
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	302, 629
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	3 cut(s)	221, 1003, 1092
AfiI	CCNNNNNNNGG	3 cut(s)	143, 521, 704
AgsI	TTSAA	6 cut(s)	82, 267, 307, 356, 769, 854
AjiI	CACGTC	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	6 cut(s)	331, 556, 674, 695, 713, 977
AluI	AGCT	6 cut(s)	331, 556, 674, 695, 713, 977
Alw21I	GWGCWC	3 cut(s)	685, 850, 937
Alw44I	GTGCAC	2 cut(s)	846, 933
AlwI	GGATC	1 cut(s)	819
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	5 cut(s)	145, 153, 359, 1074, 1195
ApaLI	GTGCAC	2 cut(s)	846, 933
ApeKI	GCWGC	3 cut(s)	328, 692, 794
ApoI	RAATTY	2 cut(s)	302, 629
AspS9I	GGNCC	6 cut(s)	400, 623, 652, 727, 989, 1075
AsuHPI	GGTGA	3 cut(s)	79, 253, 604
AsuNHI	GCTAGC	1 cut(s)	556
AvaII	GGWCC	5 cut(s)	400, 623, 652, 727, 989
AxyI	CCTNAGG	2 cut(s)	237, 363
BaeGI	GKGCMC	2 cut(s)	850, 937
Bbv12I	GWGCWC	3 cut(s)	685, 850, 937
BbvI	GCAGC	3 cut(s)	340, 704, 781
BccI	CCATC	5 cut(s)	671, 697, 976, 1016, 1164
BceAI	ACGGC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	557, 579
BfuAI	ACCTGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	8 cut(s)	9, 99, 102, 148, 156, 329, 693, 795
BlpI	GCTNAGC	1 cut(s)	948
BlsI	GCNGC	8 cut(s)	10, 100, 103, 149, 157, 330, 694, 796
Bme18I	GGWCC	5 cut(s)	400, 623, 652, 727, 989
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	6 cut(s)	400, 623, 652, 727, 989, 1075
BmiI	GGNNCC	4 cut(s)	624, 625, 990, 991
BmsI	GCATC	2 cut(s)	463, 706
BmtI	GCTAGC	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	959
Bpu1102I	GCTNAGC	1 cut(s)	948
BpuEI	CTTGAG	2 cut(s)	161, 707
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 521, 704
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	3 cut(s)	217, 610, 654
Bse21I	CCTNAGG	2 cut(s)	237, 363
Bse3DI	GCAATG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	143, 521, 704
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	228, 939, 1091
BseNI	ACTGG	3 cut(s)	217, 610, 654
BseRI	GAGGAG	5 cut(s)	49, 52, 127, 164, 799
BseSI	GKGCMC	2 cut(s)	850, 937
BseXI	GCAGC	3 cut(s)	340, 704, 781
BseYI	CCCAGC	2 cut(s)	127, 137
BsgI	GTGCAG	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	1110
BshFI	GGCC	5 cut(s)	147, 155, 361, 1076, 1197
BsiEI	CGRYCG	1 cut(s)	1110
BsiHKAI	GWGCWC	3 cut(s)	685, 850, 937
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	3 cut(s)	144, 609, 1002
BslI	CCNNNNNNNGG	3 cut(s)	143, 521, 704
BsmFI	GGGAC	3 cut(s)	144, 609, 1002
BsnI	GGCC	5 cut(s)	147, 155, 361, 1076, 1197
Bsp1286I	GDGCHC	3 cut(s)	685, 850, 937
Bsp143I	GATC	5 cut(s)	169, 454, 774, 824, 1107
Bsp1720I	GCTNAGC	1 cut(s)	948
BspACI	CCGC	5 cut(s)	8, 98, 101, 148, 156
BspANI	GGCC	5 cut(s)	147, 155, 361, 1076, 1197
BspCNI	CTCAG	3 cut(s)	229, 940, 1092
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	4 cut(s)	624, 625, 990, 991
BspMI	ACCTGC	1 cut(s)	98
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	819
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	3 cut(s)	217, 610, 654
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	5 cut(s)	169, 454, 774, 824, 1107
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	427, 1006
BstACI	GRCGYC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	558, 817, 965
BstDEI	CTNAG	5 cut(s)	237, 363, 948, 959, 1100
BstKTI	GATC	5 cut(s)	172, 457, 777, 827, 1110
BstMBI	GATC	5 cut(s)	169, 454, 774, 824, 1107
BstMCI	CGRYCG	1 cut(s)	1110
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 147, 680, 689, 698
BstNSI	RCATGY	1 cut(s)	293
BstSLI	GKGCMC	2 cut(s)	850, 937
BstV1I	GCAGC	3 cut(s)	340, 704, 781
BstX2I	RGATCY	2 cut(s)	454, 824
BstYI	RGATCY	2 cut(s)	454, 824
Bsu36I	CCTNAGG	2 cut(s)	237, 363
BsuRI	GGCC	5 cut(s)	147, 155, 361, 1076, 1197
BtgZI	GCGATG	1 cut(s)	716
BtrI	CACGTC	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	1123
BtsIMutI	CAGTG	5 cut(s)	436, 545, 749, 1011, 1123
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	558, 817, 965
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	6 cut(s)	400, 623, 652, 727, 989, 1075
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	220, 1002, 1091
CviAII	CATG	5 cut(s)	151, 290, 470, 656, 863
CviQI	GTAC	3 cut(s)	220, 1002, 1091
DdeI	CTNAG	5 cut(s)	237, 363, 948, 959, 1100
DpnI	GATC	5 cut(s)	171, 456, 776, 826, 1109
DpnII	GATC	5 cut(s)	169, 454, 774, 824, 1107
EaeI	YGGCCR	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	403
Eco147I	AGGCCT	1 cut(s)	361
Eco47I	GGWCC	5 cut(s)	400, 623, 652, 727, 989
Eco81I	CCTNAGG	2 cut(s)	237, 363
EcoO109I	RGGNCCY	3 cut(s)	623, 989, 1075
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	5 cut(s)	154, 293, 473, 659, 866
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	3 cut(s)	144, 609, 1002
FatI	CATG	5 cut(s)	150, 289, 469, 655, 862
FauNDI	CATATG	1 cut(s)	1058
Fnu4HI	GCNGC	8 cut(s)	9, 99, 102, 148, 156, 329, 693, 795
Fsp4HI	GCNGC	8 cut(s)	9, 99, 102, 148, 156, 329, 693, 795
FspBI	CTAG	2 cut(s)	557, 579
GluI	GCNGC	8 cut(s)	9, 99, 102, 148, 156, 329, 693, 795
GsaI	CCCAGC	2 cut(s)	131, 141
HaeIII	GGCC	5 cut(s)	147, 155, 361, 1076, 1197
HapII	CCGG	1 cut(s)	414
HgaI	GACGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	5 cut(s)	154, 293, 473, 659, 866
HinfI	GANTC	4 cut(s)	121, 244, 868, 954
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	3 cut(s)	79, 253, 604
Hpy166II	GTNNAC	3 cut(s)	848, 935, 1178
Hpy188I	TCNGA	2 cut(s)	109, 1112
Hpy188III	TCNNGA	4 cut(s)	167, 419, 470, 872
Hpy8I	GTNNAC	3 cut(s)	848, 935, 1178
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	40, 59, 88
HpyCH4III	ACNGT	2 cut(s)	427, 1006
HpyCH4IV	ACGT	3 cut(s)	204, 222, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 147, 680, 689, 698
HpyF3I	CTNAG	5 cut(s)	237, 363, 948, 959, 1100
HpySE526I	ACGT	3 cut(s)	204, 222, 1018
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	5 cut(s)	154, 293, 473, 659, 866
KflI	GGGWCCC	2 cut(s)	623, 989
Kzo9I	GATC	5 cut(s)	169, 454, 774, 824, 1107
LmnI	GCTCC	3 cut(s)	32, 680, 700
Lsp1109I	GCAGC	3 cut(s)	340, 704, 781
LweI	GCATC	2 cut(s)	463, 706
MaeI	CTAG	2 cut(s)	557, 579
MaeII	ACGT	3 cut(s)	204, 222, 1018
MalI	GATC	5 cut(s)	171, 456, 776, 826, 1109
MboI	GATC	5 cut(s)	169, 454, 774, 824, 1107
MboII	GAAGA	3 cut(s)	255, 464, 1169
MfeI	CAATTG	1 cut(s)	188
MflI	RGATCY	2 cut(s)	454, 824
MhlI	GDGCHC	3 cut(s)	685, 850, 937
MluCI	AATT	8 cut(s)	188, 302, 307, 337, 629, 720, 763, 804
MlyI	GAGTC	1 cut(s)	963
MmeI	TCCRAC	1 cut(s)	87
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	22, 1061
MspA1I	CMGCKG	2 cut(s)	331, 674
MspI	CCGG	1 cut(s)	414
MunI	CAATTG	1 cut(s)	188
MwoI	GCNNNNNNNGC	5 cut(s)	133, 147, 680, 689, 698
NdeI	CATATG	1 cut(s)	1058
NdeII	GATC	5 cut(s)	169, 454, 774, 824, 1107
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	5 cut(s)	154, 293, 473, 659, 866
NlaIV	GGNNCC	4 cut(s)	624, 625, 990, 991
NspI	RCATGY	1 cut(s)	293
PagI	TCATGA	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	121, 244, 868
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	8 cut(s)	10, 100, 103, 149, 157, 330, 694, 796
Ple19I	CGATCG	1 cut(s)	1110
PleI	GAGTC	1 cut(s)	962
PpsI	GAGTC	1 cut(s)	962
PpuMI	RGGWCCY	2 cut(s)	623, 989
Psp5II	RGGWCCY	2 cut(s)	623, 989
PspFI	CCCAGC	2 cut(s)	127, 137
PspN4I	GGNNCC	4 cut(s)	624, 625, 990, 991
PspPI	GGNCC	6 cut(s)	400, 623, 652, 727, 989, 1075
PspPPI	RGGWCCY	2 cut(s)	623, 989
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	2 cut(s)	454, 824
PsyI	GACNNNGTC	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	1110
PvuII	CAGCTG	2 cut(s)	331, 674
RsaI	GTAC	3 cut(s)	221, 1003, 1092
RsaNI	GTAC	3 cut(s)	220, 1002, 1091
RseI	CAYNNNNRTG	2 cut(s)	22, 1061
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	8 cut(s)	9, 99, 102, 148, 156, 329, 693, 795
Sau3AI	GATC	5 cut(s)	169, 454, 774, 824, 1107
Sau96I	GGNCC	6 cut(s)	400, 623, 652, 727, 989, 1075
SchI	GAGTC	1 cut(s)	963
SduI	GDGCHC	3 cut(s)	685, 850, 937
SfaNI	GCATC	2 cut(s)	463, 706
SinI	GGWCC	5 cut(s)	400, 623, 652, 727, 989
SmiMI	CAYNNNNRTG	2 cut(s)	22, 1061
SmlI	CTYRAG	2 cut(s)	176, 686
SmoI	CTYRAG	2 cut(s)	176, 686
Sse9I	AATT	8 cut(s)	188, 302, 307, 337, 629, 720, 763, 804
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	5 cut(s)	8, 98, 101, 148, 156
SspMI	CTAG	2 cut(s)	557, 579
StuI	AGGCCT	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	427, 1006
TaiI	ACGT	3 cut(s)	207, 225, 1021
TaqI	TCGA	2 cut(s)	168, 777
TasI	AATT	8 cut(s)	188, 302, 307, 337, 629, 720, 763, 804
TatI	WGTACW	1 cut(s)	1001
TauI	GCSGC	5 cut(s)	11, 101, 104, 150, 158
TfiI	GAWTC	3 cut(s)	121, 244, 868
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	5 cut(s)	436, 552, 756, 1011, 1123
TseI	GCWGC	3 cut(s)	328, 692, 794
TspDTI	ATGAA	3 cut(s)	458, 854, 1170
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	5 cut(s)	436, 552, 756, 1011, 1123
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	521
VneI	GTGCAC	2 cut(s)	846, 933
VpaK11BI	GGWCC	5 cut(s)	400, 623, 652, 727, 989
XapI	RAATTY	2 cut(s)	302, 629
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	2 cut(s)	557, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.