Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

614975 .. 616323

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTGACATCAAACCTGCTAAAGAGCCCCTTCTTCCCCACCCGCTATGTCCCAGTCTCCCCCTCCTTCCACATCACCTGCAGCGTCTCGCAGCTGCAATCGGCGCCGGAAGCAGTGAACGGCAGAGTTTCCGAACGGAACGAGATTCGCCTCGGCTTGCCCAGCAAAGGCCGTATGGCTGCCGACACTCTTGATCTCCTCAAGGACTGCCAGCTGTCCGTCAAGCACGTCAATCCTCGTCAATACGTCGCCCAAATCCCTCAGCTTTCGGACTTGGAGGTGTGGTTTCAACGGCCGAAGGACATTGTGCGGAAATTGTTGTCCGGTGACTTGGACCTTGGCATTGCGGGTTTTGATACTGTCAGTGAATACGGAGAGGGGAATGAACGATCTTATCATTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

6.82

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	2 cut(s)	24, 86
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	3 cut(s)	43, 310, 347
AcoI	YGGCCR	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	3 cut(s)	94, 214, 265
AluI	AGCT	3 cut(s)	94, 214, 265
Alw26I	GTCTC	2 cut(s)	61, 91
AoxI	GGCC	2 cut(s)	169, 293
ApeKI	GCWGC	4 cut(s)	81, 91, 94, 179
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	67, 338
AvaII	GGWCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	81, 93, 103, 166
BceAI	ACGGC	3 cut(s)	136, 156, 308
BcoDI	GTCTC	2 cut(s)	61, 91
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	107
BfuAI	ACCTGC	2 cut(s)	24, 86
BisI	GCNGC	4 cut(s)	82, 92, 95, 180
BlsI	GCNGC	4 cut(s)	83, 93, 96, 181
Bme18I	GGWCC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	151, 337
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	151, 337
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	188
BseX3I	CGGCCG	1 cut(s)	293
BseXI	GCAGC	4 cut(s)	81, 93, 103, 166
BseYI	CCCAGC	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	171, 295
BshNI	GGYRCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	107, 324
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	61, 91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	171, 295
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	193, 389
BspACI	CCGC	3 cut(s)	43, 310, 347
BspANI	GGCC	2 cut(s)	171, 295
BspCNI	CTCAG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	83
BspMI	ACCTGC	2 cut(s)	24, 86
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	151, 337
BssMI	GATC	2 cut(s)	193, 389
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	158, 212
BstDEI	CTNAG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	196, 392
BstMAI	GTCTC	2 cut(s)	61, 91
BstMBI	GATC	2 cut(s)	193, 389
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 110, 162
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	81, 93, 103, 166
BstZI	CGGCCG	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	171, 295
BtrI	CACGTC	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 370
BveI	ACCTGC	2 cut(s)	24, 86
Cac8I	GCNNGC	2 cut(s)	158, 212
CciI	TCATGA	1 cut(s)	404
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	1 cut(s)	73
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	8 cut(s)	27, 94, 156, 171, 179, 214, 265, 295
CviKI_1	RGCY	8 cut(s)	27, 94, 156, 171, 179, 214, 265, 295
DdeI	CTNAG	1 cut(s)	261
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	2 cut(s)	195, 391
DpnII	GATC	2 cut(s)	193, 389
EaeI	YGGCCR	1 cut(s)	293
EagI	CGGCCG	1 cut(s)	293
EclXI	CGGCCG	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	334
Eco52I	CGGCCG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	29
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	408
FaiI	YATR	3 cut(s)	48, 176, 406
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	404
FauI	CCCGC	2 cut(s)	50, 340
Fnu4HI	GCNGC	4 cut(s)	82, 92, 95, 180
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	82, 92, 95, 180
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	4 cut(s)	82, 92, 95, 180
GsaI	CCCAGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	171, 295
HapII	CCGG	2 cut(s)	107, 324
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	107, 324
HphI	GGTGA	2 cut(s)	67, 338
Hpy166II	GTNNAC	2 cut(s)	6, 118
Hpy188I	TCNGA	2 cut(s)	133, 271
Hpy188III	TCNNGA	2 cut(s)	191, 405
Hpy8I	GTNNAC	2 cut(s)	6, 118
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	40, 76, 292
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	228, 246
HpyCH4V	TGCA	2 cut(s)	81, 97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 110, 162
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	2 cut(s)	228, 246
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	193, 389
LpnPI	CCDG	7 cut(s)	29, 66, 91, 120, 175, 224, 337
Lsp1109I	GCAGC	4 cut(s)	81, 93, 103, 166
MaeII	ACGT	2 cut(s)	228, 246
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	195, 391
MboI	GATC	2 cut(s)	193, 389
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	314
Mly113I	GGCGCC	1 cut(s)	104
MnlI	CCTC	7 cut(s)	73, 161, 209, 246, 270, 271, 370
MspA1I	CMGCKG	2 cut(s)	94, 214
MspI	CCGG	2 cut(s)	107, 324
MwoI	GCNNNNNNNGC	3 cut(s)	103, 110, 162
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	2 cut(s)	193, 389
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	326
PagI	TCATGA	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	83, 93, 96, 181
PluTI	GGCGCC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	83
PvuII	CAGCTG	2 cut(s)	94, 214
SatI	GCNGC	4 cut(s)	82, 92, 95, 180
Sau3AI	GATC	2 cut(s)	193, 389
Sau96I	GGNCC	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	9 cut(s)	18, 80, 96, 216, 231, 249, 267, 282, 339
SfcI	CTRYAG	1 cut(s)	79
SfoI	GGCGCC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	3 cut(s)	43, 310, 347
SspDI	GGCGCC	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	231, 249
TasI	AATT	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	120, 370
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	4 cut(s)	81, 91, 94, 179
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	393, 399
TspGWI	ACGGA	3 cut(s)	151, 208, 387
TspRI	CASTG	2 cut(s)	120, 370
VpaK11BI	GGWCC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.