Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

9128938 .. 9131132

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG083500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCCCTGTTTCCCACTGCTCGCTCGGTTCCCATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTTTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGCAGTTCTTGTTGCTAGCAAGAGATCCTTGCTCGGAAGGAAAAATTCACTAGACGCGACACTGGCAATAGTGCACAAGAAGTGCATGTGTGAGAGAATCCTTAGCCAGCCATTATTATCTGGTTTGCGGGGCCCGACTGTAAGTCCAGTTTATCGCAAAGGTGATGATGGGAAAGAAACAGTTGATTACTATGCCATTATCATATGTCTACCGGAAGAGGCACCCTACGAGTCTGTAAAACAACTGAGATCGATTGGAGGCAGTGGGGTTATAGTTATCCCTTCTTCGACTTACATTTTTGATGAAGAAACTCCTCCAAGATGGCCTGAACTTCTCTCAAACCTTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

315

Amino Acids

34.29

Weight (kDa)

5.57

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	55 - 213	4.8e-29	ATP phosphoribosyltransferase
HisG_C	PF08029	236 - 292	4e-07	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	814
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	802
AccII	CGCG	1 cut(s)	650
AciI	CCGC	3 cut(s)	181, 301, 721
AclWI	GGATC	2 cut(s)	94, 612
AcsI	RAATTY	4 cut(s)	239, 346, 434, 637
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	326, 509
AgsI	TTSAA	3 cut(s)	149, 161, 457
AhdI	GACNNNNNGTC	1 cut(s)	735
AluBI	AGCT	3 cut(s)	479, 500, 518
AluI	AGCT	3 cut(s)	479, 500, 518
Alw21I	GWGCWC	2 cut(s)	490, 669
Alw44I	GTGCAC	1 cut(s)	665
AlwI	GGATC	2 cut(s)	94, 612
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	724, 917
ApaI	GGGCCC	1 cut(s)	728
ApaLI	GTGCAC	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	74, 497
ApoI	RAATTY	4 cut(s)	239, 346, 434, 637
AspS9I	GGNCC	4 cut(s)	428, 532, 724, 725
AsuHPI	GGTGA	3 cut(s)	55, 409, 767
AsuNHI	GCTAGC	1 cut(s)	608
AvaII	GGWCC	2 cut(s)	428, 532
BaeGI	GKGCMC	2 cut(s)	669, 728
BanI	GGYRCC	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	728
Bbv12I	GWGCWC	2 cut(s)	490, 669
BbvI	GCAGC	2 cut(s)	61, 509
BccI	CCATC	4 cut(s)	476, 502, 755, 909
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BfaI	CTAG	3 cut(s)	609, 644, 946
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	3 cut(s)	75, 301, 498
BlsI	GCNGC	3 cut(s)	76, 302, 499
BmcAI	AGTACT	1 cut(s)	544
Bme18I	GGWCC	2 cut(s)	428, 532
BmeRI	GACNNNNNGTC	1 cut(s)	735
BmgT120I	GGNCC	4 cut(s)	428, 532, 724, 725
BmiI	GGNNCC	5 cut(s)	30, 429, 725, 726, 816
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	86, 268
BmtI	GCTAGC	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	555
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu10I	CCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	512
Bsa29I	ATCGAT	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	208, 937
BsaWI	WCCGGW	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 509
Bse1I	ACTGG	4 cut(s)	415, 550, 660, 740
BseCI	ATCGAT	1 cut(s)	845
BseDI	CCNNGG	2 cut(s)	208, 937
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	326, 509
BseMII	CTCAG	1 cut(s)	830
BseNI	ACTGG	4 cut(s)	415, 550, 660, 740
BseRI	GAGGAG	2 cut(s)	31, 897
BseSI	GKGCMC	2 cut(s)	669, 728
BseXI	GCAGC	2 cut(s)	61, 509
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	2 cut(s)	726, 919
BshNI	GGYRCC	1 cut(s)	814
BshVI	ATCGAT	1 cut(s)	845
BsiHKAI	GWGCWC	2 cut(s)	490, 669
BsiSI	CCGG	1 cut(s)	806
BslI	CCNNNNNNNGG	2 cut(s)	326, 509
BsnI	GGCC	2 cut(s)	726, 919
Bsp120I	GGGCCC	1 cut(s)	724
Bsp1286I	GDGCHC	3 cut(s)	490, 669, 728
Bsp143I	GATC	4 cut(s)	99, 259, 617, 842
BspACI	CCGC	3 cut(s)	181, 301, 721
BspANI	GGCC	2 cut(s)	726, 919
BspCNI	CTCAG	1 cut(s)	831
BspDI	ATCGAT	1 cut(s)	845
BspFNI	CGCG	1 cut(s)	650
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	5 cut(s)	30, 429, 725, 726, 816
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	2 cut(s)	94, 612
BspT107I	GGYRCC	1 cut(s)	814
BsrBI	CCGCTC	1 cut(s)	303
BsrI	ACTGG	4 cut(s)	415, 550, 660, 740
BssECI	CCNNGG	2 cut(s)	208, 937
BssMI	GATC	4 cut(s)	99, 259, 617, 842
BssT1I	CCWWGG	2 cut(s)	208, 937
Bst4CI	ACNGT	5 cut(s)	142, 232, 326, 733, 775
Bst6I	CTCTTC	2 cut(s)	49, 804
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	22, 610, 701
BstDEI	CTNAG	2 cut(s)	695, 839
BstF5I	GGATG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	650
BstKTI	GATC	4 cut(s)	102, 262, 620, 845
BstMBI	GATC	4 cut(s)	99, 259, 617, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 485, 494, 503, 656
BstNSI	RCATGY	1 cut(s)	682
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	669, 728
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	61, 509
BstX2I	RGATCY	3 cut(s)	99, 259, 617
BstYI	RGATCY	3 cut(s)	99, 259, 617
Bsu15I	ATCGAT	1 cut(s)	845
BsuRI	GGCC	2 cut(s)	726, 919
BsuTUI	ATCGAT	1 cut(s)	845
BtgZI	GCGATG	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	305
BtsI	GCAGTG	2 cut(s)	15, 862
BtsIMutI	CAGTG	3 cut(s)	15, 653, 862
Cac8I	GCNNGC	3 cut(s)	22, 610, 701
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	4 cut(s)	428, 532, 724, 725
ClaI	ATCGAT	1 cut(s)	845
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	543
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	5 cut(s)	34, 81, 275, 461, 679
CviJI	RGCY	8 cut(s)	414, 479, 500, 518, 699, 703, 726, 919
CviKI_1	RGCY	8 cut(s)	414, 479, 500, 518, 699, 703, 726, 919
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	695, 839
DpnI	GATC	4 cut(s)	101, 261, 619, 844
DpnII	GATC	4 cut(s)	99, 259, 617, 842
DriI	GACNNNNNGTC	1 cut(s)	735
Eam1104I	CTCTTC	2 cut(s)	49, 804
Eam1105I	GACNNNNNGTC	1 cut(s)	735
EarI	CTCTTC	2 cut(s)	49, 804
Eco130I	CCWWGG	2 cut(s)	208, 937
Eco24I	GRGCYC	1 cut(s)	728
Eco47I	GGWCC	2 cut(s)	428, 532
EcoO109I	RGGNCCY	2 cut(s)	428, 724
EcoT14I	CCWWGG	2 cut(s)	208, 937
EcoT38I	GRGCYC	1 cut(s)	728
ErhI	CCWWGG	2 cut(s)	208, 937
FaeI	CATG	5 cut(s)	37, 84, 278, 464, 682
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	5 cut(s)	33, 80, 274, 460, 678
FauI	CCCGC	1 cut(s)	714
FauNDI	CATATG	1 cut(s)	797
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	3 cut(s)	75, 301, 498
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	3 cut(s)	75, 301, 498
FspBI	CTAG	3 cut(s)	609, 644, 946
GluI	GCNGC	3 cut(s)	75, 301, 498
HaeIII	GGCC	2 cut(s)	726, 919
HapII	CCGG	1 cut(s)	806
HgaI	GACGC	1 cut(s)	656
Hin1II	CATG	5 cut(s)	37, 84, 278, 464, 682
HinfI	GANTC	2 cut(s)	690, 824
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	3 cut(s)	55, 409, 767
Hpy166II	GTNNAC	2 cut(s)	667, 803
Hpy188I	TCNGA	2 cut(s)	88, 629
Hpy188III	TCNNGA	2 cut(s)	275, 353
Hpy8I	GTNNAC	2 cut(s)	667, 803
HpyAV	CCTTC	2 cut(s)	624, 885
HpyCH4III	ACNGT	5 cut(s)	142, 232, 326, 733, 775
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	77, 314, 667, 678
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 485, 494, 503, 656
HpyF3I	CTNAG	2 cut(s)	695, 839
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	5 cut(s)	37, 84, 278, 464, 682
Kzo9I	GATC	4 cut(s)	99, 259, 617, 842
LmnI	GCTCC	2 cut(s)	485, 505
Lsp1109I	GCAGC	2 cut(s)	61, 509
LweI	GCATC	2 cut(s)	86, 268
MaeI	CTAG	3 cut(s)	609, 644, 946
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	4 cut(s)	101, 261, 619, 844
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	4 cut(s)	99, 259, 617, 842
MboII	GAAGA	5 cut(s)	36, 269, 821, 870, 911
MflI	RGATCY	3 cut(s)	99, 259, 617
MhlI	GDGCHC	3 cut(s)	490, 669, 728
MluCI	AATT	5 cut(s)	239, 346, 434, 576, 637
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	806
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	5 cut(s)	187, 485, 494, 503, 656
NdeI	CATATG	1 cut(s)	797
NdeII	GATC	4 cut(s)	99, 259, 617, 842
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	5 cut(s)	37, 84, 278, 464, 682
NlaIV	GGNNCC	5 cut(s)	30, 429, 725, 726, 816
NmuCI	GTSAC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	682
PagI	TCATGA	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	690
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	76, 302, 499
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PpuMI	RGGWCCY	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	428
PspN4I	GGNNCC	5 cut(s)	30, 429, 725, 726, 816
PspOMI	GGGCCC	1 cut(s)	724
PspPI	GGNCC	4 cut(s)	428, 532, 724, 725
PspPPI	RGGWCCY	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	3 cut(s)	99, 259, 617
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SatI	GCNGC	3 cut(s)	75, 301, 498
Sau3AI	GATC	4 cut(s)	99, 259, 617, 842
Sau96I	GGNCC	4 cut(s)	428, 532, 724, 725
ScaI	AGTACT	1 cut(s)	544
SchI	GAGTC	1 cut(s)	833
SduI	GDGCHC	3 cut(s)	490, 669, 728
SfaNI	GCATC	2 cut(s)	86, 268
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	2 cut(s)	428, 532
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	5 cut(s)	239, 346, 434, 576, 637
SsiI	CCGC	3 cut(s)	181, 301, 721
SspMI	CTAG	3 cut(s)	609, 644, 946
StyI	CCWWGG	2 cut(s)	208, 937
TaaI	ACNGT	5 cut(s)	142, 232, 326, 733, 775
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	845, 881
TasI	AATT	5 cut(s)	239, 346, 434, 576, 637
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	690
TscAI	CASTG	3 cut(s)	22, 660, 862
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	2 cut(s)	74, 497
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	4 cut(s)	263, 270, 455, 912
TspRI	CASTG	3 cut(s)	22, 660, 862
Van91I	CCANNNNNTGG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	428, 532
XapI	RAATTY	4 cut(s)	239, 346, 434, 637
XceI	RCATGY	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	802
XspI	CTAG	3 cut(s)	609, 644, 946
ZrmI	AGTACT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.