Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

9048587 .. 9049063

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG079300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTGTGAGAGAATCCTTAGCCAGCCATTATTATCTGGTTTGCGGGGCCCGACTGTAAGTCCAGTTTATCGCAAAGGTGATGATGGGAAAGAAACAGTTGATTACTATGCCATTATCATATGTCTACCGGAAGAGGCACCCTACGAGTCTGTAAAACAACTGAGATCGATTGGAGGCAGTGGGGTTATAGTTATCCCTTCTTCGACTTACATTTTTGATGAAGAAACTCCTCCAAGATGGCCTGAACTTCTCTCAAACCTTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

89

Amino Acids

9.83

Weight (kDa)

4.64

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG_C	PF08029	10 - 66	4.4e-08	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	1 cut(s)	43
AhdI	GACNNNNNGTC	1 cut(s)	57
AoxI	GGCC	2 cut(s)	46, 239
ApaI	GGGCCC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	46, 47
AsuHPI	GGTGA	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	50
BccI	CCATC	2 cut(s)	77, 231
BfaI	CTAG	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	46, 47
BmiI	GGNNCC	3 cut(s)	47, 48, 138
Bpu10I	CCTNAGC	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	48, 241
BshNI	GGYRCC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	128
BsnI	GGCC	2 cut(s)	48, 241
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	48, 241
BspCNI	CTCAG	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	47, 48, 138
BspT107I	GGYRCC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	55, 97
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	17, 161
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	48, 241
BsuTUI	ATCGAT	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	46, 47
ClaI	ATCGAT	1 cut(s)	167
CviJI	RGCY	4 cut(s)	21, 25, 48, 241
CviKI_1	RGCY	4 cut(s)	21, 25, 48, 241
DdeI	CTNAG	2 cut(s)	17, 161
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
DriI	GACNNNNNGTC	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	126
Eam1105I	GACNNNNNGTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	259
FaiI	YATR	4 cut(s)	108, 119, 121, 188
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	48, 241
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	2 cut(s)	12, 146
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	2 cut(s)	55, 97
HpyF3I	CTNAG	2 cut(s)	17, 161
Kzo9I	GATC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	21, 35, 75, 141, 255
MaeI	CTAG	1 cut(s)	268
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	3 cut(s)	143, 192, 233
MhlI	GDGCHC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	3 cut(s)	127, 167, 240
MspI	CCGG	1 cut(s)	128
NdeI	CATATG	1 cut(s)	119
NdeII	GATC	1 cut(s)	164
NlaIV	GGNNCC	3 cut(s)	47, 48, 138
PfeI	GAWTC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	47, 48, 138
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	46, 47
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	2 cut(s)	46, 47
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	2 cut(s)	79, 261
SgeI	CNNG	9 cut(s)	34, 48, 56, 61, 74, 140, 157, 246, 254
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	55, 97
TaqI	TCGA	2 cut(s)	167, 203
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.