Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

1083748 .. 1087313

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G013100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTCGTGGTCATGGTCATAGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTTATGGTCATAGTAGTTGTCATGGTTGTAGTCATGCTTGTGGCCGTGGTCGTGGGGAATGAATATCTTATCATTGTTCATGATGCTCTTGATTATGGGATTCCAAAATATGGGATTTTTGAGAATAGAAATTCACTGAAGGATTTAGCACAAATGCCTCAATGGGCTGAAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATCTGGGTCCGAAATTTATGAAAGAAAATGGACTGAACCATGTGAGCTTTTCAACTGCCGATGAAGCGCTCGAGGCAGCTCCCACAATGTGGATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGACCACACTGAAAGAAAACAACTTGAAAGAGATCGAGGGGGGAGTTGTAGTTCTTGTTGCAAGCAAGAGATCGTTGATCCAAAGGAAAAGTGCACTGGACACGACACATGAGATTCTTGAAATATTGGAGGCGCATCTAAGGGCTGAGGGTGAGTTCACGGTAACTGCAAATATGAGAGGAAGTAGGGCAGAGGAAGTGGCTGAGCGTGTTTTGAGCCAGCCATCATTATCACGTTTGCAGGGACCCACCATAAGTCTAGTTTTTTGCAAACGTGATGGGCAAATTGCTTCTGATTACTATGCCATAGTCATATGTGTACCCAAAAAGGCGCTCTACAGGTCTGTACAACAACTGAGAGTGATTGGAGGCAGCAGGGTTCTAGTTTCCTCTTTGACCTACATTTTTTATGAAGAAACTCTGAGATGGCGCGAACTCCTCTCAGCACTTGGCCTCCAGTTCTCTCTCTGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

288

Amino Acids

31.65

Weight (kDa)

5.89

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	167, 351
AccII	CGCG	1 cut(s)	819
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	187, 275
AcuI	CTGAAG	2 cut(s)	215, 246
AdeI	CACNNNGTG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	708, 735
AfeI	AGCGCT	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	167, 351
AgsI	TTSAA	3 cut(s)	315, 415, 509
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	3 cut(s)	309, 341, 359
AluI	AGCT	3 cut(s)	309, 341, 359
Alw21I	GWGCWC	1 cut(s)	484
Alw44I	GTGCAC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	332
Aor51HI	AGCGCT	1 cut(s)	330
AoxI	GGCC	2 cut(s)	99, 838
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	2 cut(s)	338, 759
ApoI	RAATTY	2 cut(s)	187, 275
AspLEI	GCGC	4 cut(s)	331, 523, 721, 819
AspS9I	GGNCC	4 cut(s)	269, 373, 390, 632
AsuHPI	GGTGA	2 cut(s)	250, 551
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	4 cut(s)	269, 373, 390, 632
BaeGI	GKGCMC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	484
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	350, 771
BccI	CCATC	3 cut(s)	619, 659, 807
BceAI	ACGGC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	647, 770
BfmI	CTRYAG	1 cut(s)	724
BfoI	RGCGCY	2 cut(s)	332, 722
BisI	GCNGC	2 cut(s)	339, 760
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	2 cut(s)	340, 761
Bme18I	GGWCC	4 cut(s)	269, 373, 390, 632
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	4 cut(s)	269, 373, 390, 632
BmiI	GGNNCC	4 cut(s)	270, 391, 633, 634
BmsI	GCATC	3 cut(s)	130, 352, 532
BpmI	CTGGAG	1 cut(s)	827
Bpu10I	CCTNAGC	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	4 cut(s)	423, 453, 825, 855
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 351
Bse1I	ACTGG	3 cut(s)	256, 489, 844
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	167, 351
BseMII	CTCAG	5 cut(s)	525, 582, 734, 800, 843
BseNI	ACTGG	3 cut(s)	256, 489, 844
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	2 cut(s)	350, 771
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	2 cut(s)	101, 840
BsiHKAI	GWGCWC	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	403, 645
BslI	CCNNNNNNNGG	2 cut(s)	167, 351
BsmFI	GGGAC	2 cut(s)	403, 645
BsnI	GGCC	2 cut(s)	101, 840
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp1407I	TGTACA	1 cut(s)	733
Bsp143I	GATC	3 cut(s)	420, 458, 465
Bsp1720I	GCTNAGC	1 cut(s)	591
BspANI	GGCC	2 cut(s)	101, 840
BspCNI	CTCAG	5 cut(s)	526, 583, 735, 801, 842
BspFNI	CGCG	1 cut(s)	819
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	4 cut(s)	270, 391, 633, 634
BspPI	GGATC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	733
BsrI	ACTGG	3 cut(s)	256, 489, 844
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	3 cut(s)	420, 458, 465
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	451, 608
BstDEI	CTNAG	6 cut(s)	527, 534, 591, 743, 809, 829
BstDSI	CCRYGG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	819
BstH2I	RGCGCY	2 cut(s)	332, 722
BstHHI	GCGC	4 cut(s)	331, 523, 721, 819
BstKTI	GATC	3 cut(s)	423, 461, 468
BstMBI	GATC	3 cut(s)	420, 458, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstSFI	CTRYAG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	484
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	350, 771
BsuRI	GGCC	2 cut(s)	101, 840
BtgI	CCRYGG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	191, 395, 482
Cac8I	GCNNGC	2 cut(s)	451, 608
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	4 cut(s)	331, 523, 721, 819
Cfr13I	GGNCC	4 cut(s)	269, 373, 390, 632
Csp6I	GTAC	2 cut(s)	707, 734
CviAII	CATG	6 cut(s)	13, 79, 91, 137, 302, 497
CviQI	GTAC	2 cut(s)	707, 734
DdeI	CTNAG	6 cut(s)	527, 534, 591, 743, 809, 829
DpnI	GATC	3 cut(s)	422, 460, 467
DpnII	GATC	3 cut(s)	420, 458, 465
DraIII	CACNNNGTG	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco47I	GGWCC	4 cut(s)	269, 373, 390, 632
Eco47III	AGCGCT	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	215, 246
Eco88I	CYCGRG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	632
FaeI	CATG	6 cut(s)	16, 82, 94, 140, 305, 500
FaqI	GGGAC	2 cut(s)	403, 645
FatI	CATG	6 cut(s)	12, 78, 90, 136, 301, 496
FauNDI	CATATG	1 cut(s)	701
Fnu4HI	GCNGC	2 cut(s)	339, 760
Fsp4HI	GCNGC	2 cut(s)	339, 760
FspBI	CTAG	2 cut(s)	647, 770
GlaI	GCGC	4 cut(s)	330, 522, 720, 818
GluI	GCNGC	2 cut(s)	339, 760
GsuI	CTGGAG	1 cut(s)	827
HaeII	RGCGCY	2 cut(s)	332, 722
HaeIII	GGCC	2 cut(s)	101, 840
HhaI	GCGC	4 cut(s)	331, 523, 721, 819
Hin1II	CATG	6 cut(s)	16, 82, 94, 140, 305, 500
Hin6I	GCGC	4 cut(s)	329, 521, 719, 817
HinP1I	GCGC	4 cut(s)	329, 521, 719, 817
HinfI	GANTC	2 cut(s)	157, 502
HphI	GGTGA	2 cut(s)	250, 551
Hpy166II	GTNNAC	3 cut(s)	482, 546, 707
Hpy188I	TCNGA	3 cut(s)	273, 682, 810
Hpy188III	TCNNGA	3 cut(s)	137, 146, 506
Hpy8I	GTNNAC	3 cut(s)	482, 546, 707
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	2 cut(s)	622, 661
HpyCH4V	TGCA	6 cut(s)	365, 449, 482, 557, 628, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	6 cut(s)	527, 534, 591, 743, 809, 829
HpySE526I	ACGT	2 cut(s)	622, 661
Hsp92II	CATG	6 cut(s)	16, 82, 94, 140, 305, 500
HspAI	GCGC	4 cut(s)	329, 521, 719, 817
KflI	GGGWCCC	1 cut(s)	632
Kzo9I	GATC	3 cut(s)	420, 458, 465
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	8 cut(s)	237, 251, 470, 614, 620, 712, 748, 857
Lsp1109I	GCAGC	2 cut(s)	350, 771
LweI	GCATC	3 cut(s)	130, 352, 532
MaeI	CTAG	2 cut(s)	647, 770
MaeII	ACGT	2 cut(s)	622, 661
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	3 cut(s)	422, 460, 467
MboI	GATC	3 cut(s)	420, 458, 465
MboII	GAAGA	2 cut(s)	239, 812
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	4 cut(s)	187, 275, 366, 672
MslI	CAYNNNNRTG	2 cut(s)	23, 95
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NdeI	CATATG	1 cut(s)	701
NdeII	GATC	3 cut(s)	420, 458, 465
NlaIII	CATG	6 cut(s)	16, 82, 94, 140, 305, 500
NlaIV	GGNNCC	4 cut(s)	270, 391, 633, 634
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	157, 502
PflMI	CCANNNNNTGG	2 cut(s)	167, 351
PkrI	GCNGC	2 cut(s)	340, 761
PpuMI	RGGWCCY	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	632
PspN4I	GGNNCC	4 cut(s)	270, 391, 633, 634
PspPI	GGNCC	4 cut(s)	269, 373, 390, 632
PspPPI	RGGWCCY	1 cut(s)	632
PspXI	VCTCGAGB	1 cut(s)	332
RsaI	GTAC	2 cut(s)	708, 735
RsaNI	GTAC	2 cut(s)	707, 734
RseI	CAYNNNNRTG	2 cut(s)	23, 95
SatI	GCNGC	2 cut(s)	339, 760
Sau3AI	GATC	3 cut(s)	420, 458, 465
Sau96I	GGNCC	4 cut(s)	269, 373, 390, 632
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	3 cut(s)	130, 352, 532
SfcI	CTRYAG	1 cut(s)	724
Sfr274I	CTCGAG	1 cut(s)	332
SinI	GGWCC	4 cut(s)	269, 373, 390, 632
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	23, 95
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	4 cut(s)	187, 275, 366, 672
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	647, 770
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	2 cut(s)	625, 664
TaqI	TCGA	2 cut(s)	333, 423
TasI	AATT	4 cut(s)	187, 275, 366, 672
TatI	WGTACW	1 cut(s)	733
TfiI	GAWTC	2 cut(s)	157, 502
TscAI	CASTG	3 cut(s)	198, 402, 489
TseI	GCWGC	2 cut(s)	338, 759
TspDTI	ATGAA	5 cut(s)	125, 132, 296, 339, 813
TspRI	CASTG	3 cut(s)	198, 402, 489
Van91I	CCANNNNNTGG	2 cut(s)	167, 351
VneI	GTGCAC	1 cut(s)	480
VpaK11BI	GGWCC	4 cut(s)	269, 373, 390, 632
XapI	RAATTY	2 cut(s)	187, 275
XhoI	CTCGAG	1 cut(s)	332
XspI	CTAG	2 cut(s)	647, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.