Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

8732734 .. 8734322

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTGGCGGCAAACCCACCCAAACGCCCCTTCTTTGTTACTCACTCCCTCCCCCTCTCCTCCTCTCCCTCGCCGTCCTTCAAAATCACCTGTTCTGCGGCGGCGTCGGCGGCGGAGGAGAGGAGCGAGATTCGGCTGGGACTGCCCATCAAAGGCCACATGGGCGCCGACACTCTCGATCTCCTCAAGGACTGCCAGTTTTCCGTCAAGCCCGTCAATCCTCACCAGTACGTTGCTAAAATTCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTACCGGTCTTGACACCGTCAGTGAATATGGACAGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAGTGAATACCAAAATATGGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

151

Amino Acids

16.5

Weight (kDa)

5.67

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	93 - 146	6e-09	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	444
AciI	CCGC	5 cut(s)	8, 98, 101, 110, 113
AcsI	RAATTY	1 cut(s)	240
AcyI	GRCGYC	2 cut(s)	104, 165
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	152, 444
AgeI	ACCGGT	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	82, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
AoxI	GGCC	2 cut(s)	154, 278
ApoI	RAATTY	1 cut(s)	240
AsiGI	ACCGGT	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	79, 215
AvaII	GGWCC	1 cut(s)	319
AxyI	CCTNAGG	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	164
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	4 cut(s)	9, 99, 102, 111
BlsI	GCNGC	4 cut(s)	10, 100, 103, 112
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	2 cut(s)	104, 165
BsaJI	CCNNGG	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 444
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	196, 226
Bse21I	CCTNAGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	152, 444
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	196, 226
BseRI	GAGGAG	5 cut(s)	49, 52, 131, 136, 173
BseYI	CCCAGC	1 cut(s)	136
BshFI	GGCC	2 cut(s)	156, 280
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	152, 444
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	156, 280
Bsp143I	GATC	2 cut(s)	178, 373
BspACI	CCGC	5 cut(s)	8, 98, 101, 110, 113
BspANI	GGCC	2 cut(s)	156, 280
BspCNI	CTCAG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	196, 226
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	178, 373
BssNI	GRCGYC	2 cut(s)	104, 165
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	2 cut(s)	104, 165
BstDEI	CTNAG	2 cut(s)	246, 282
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	2 cut(s)	181, 376
BstMBI	GATC	2 cut(s)	178, 373
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 110, 142, 162
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	156, 280
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	355, 435
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	229
CspAI	ACCGGT	1 cut(s)	332
CviAII	CATG	2 cut(s)	160, 389
CviJI	RGCY	5 cut(s)	136, 156, 211, 250, 280
CviKI_1	RGCY	5 cut(s)	136, 156, 211, 250, 280
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	246, 282
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	2 cut(s)	180, 375
DpnII	GATC	2 cut(s)	178, 373
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	322
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	163, 392
FaiI	YATR	5 cut(s)	161, 357, 390, 405, 445
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	159, 388
Fnu4HI	GCNGC	4 cut(s)	9, 99, 102, 111
Fsp4HI	GCNGC	4 cut(s)	9, 99, 102, 111
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	9, 99, 102, 111
GsaI	CCCAGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	156, 280
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	104, 165
Hin1II	CATG	2 cut(s)	163, 392
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	79, 215
Hpy188III	TCNNGA	4 cut(s)	176, 245, 338, 389
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	40, 88
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 110, 142, 162
HpyF3I	CTNAG	2 cut(s)	246, 282
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	104, 165
Hsp92II	CATG	2 cut(s)	163, 392
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	178, 373
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	8 cut(s)	103, 122, 209, 239, 258, 294, 346, 347
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	180, 375
MboI	GATC	2 cut(s)	178, 373
MboII	GAAGA	1 cut(s)	383
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	2 cut(s)	240, 256
Mly113I	GGCGCC	1 cut(s)	165
MspI	CCGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	107, 110, 142, 162
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	2 cut(s)	178, 373
NlaIII	CATG	2 cut(s)	163, 392
NlaIV	GGNNCC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	444
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	10, 100, 103, 112
PluTI	GGCGCC	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SatI	GCNGC	4 cut(s)	9, 99, 102, 111
Sau3AI	GATC	2 cut(s)	178, 373
Sau96I	GGNCC	1 cut(s)	319
SetI	ASST	4 cut(s)	92, 234, 252, 324
SfaNI	GCATC	1 cut(s)	382
SfoI	GGCGCC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	240, 256
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	5 cut(s)	8, 98, 101, 110, 113
SspDI	GGCGCC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	240, 256
TauI	GCSGC	4 cut(s)	11, 101, 104, 113
TfiI	GAWTC	1 cut(s)	130
TscAI	CASTG	2 cut(s)	355, 435
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	355, 435
Tth111I	GACNNNGTC	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.