Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000160

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

419346 .. 423152

Gene Structure 3807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_160G00433890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCCGCCGACACTCTCGATCTCCTCAAGGACTGCCAATTGTCTGTCAAGCATGTCAATCCTCGCCAGTACGTTGCTAAAATCCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAAGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGTCAGTGAATATGGACAGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGCGCCACTTATCCCTTGCATTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTAAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCCTGCTCAAAATGGAAAGTGCATTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCGGTACATGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGATTGCAGGGACCCACTATAAGTACAGTGTATTGCAAACGTGATGGGAAAATAAAAGCAGATTACTATGCCATCGTCATATATGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTTAGAGCGATTGGAGGCAGTCGGGTTCTATGTTCCCCTTTGACTTGCATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCTAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

288

Amino Acids

31.51

Weight (kDa)

6.11

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	94 - 180	7.2e-19	ATP phosphoribosyltransferase
HisG_C	PF08029	185 - 269	2.8e-10	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	4 cut(s)	71, 566, 667, 756
AfiI	CCNNNNNNNGG	2 cut(s)	271, 356
AgsI	TTSAA	3 cut(s)	116, 421, 509
AluBI	AGCT	5 cut(s)	91, 326, 347, 365, 641
AluI	AGCT	5 cut(s)	91, 326, 347, 365, 641
Alw21I	GWGCWC	2 cut(s)	337, 601
Alw44I	GTGCAC	1 cut(s)	597
AlwI	GGATC	1 cut(s)	474
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	3, 119, 738, 859
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	6 cut(s)	160, 275, 304, 379, 653, 739
AvaII	GGWCC	5 cut(s)	160, 275, 304, 379, 653
BaeGI	GKGCMC	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	337, 601
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	6 cut(s)	323, 349, 640, 680, 722, 828
BfoI	RGCGCY	1 cut(s)	256
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	2 cut(s)	6, 345
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	2 cut(s)	7, 346
Bme18I	GGWCC	5 cut(s)	160, 275, 304, 379, 653
BmgT120I	GGNCC	6 cut(s)	160, 275, 304, 379, 653, 739
BmiI	GGNNCC	4 cut(s)	276, 277, 654, 655
BmsI	GCATC	2 cut(s)	223, 358
Bpu10I	CCTNAGC	2 cut(s)	87, 623
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	11, 359
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 356
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	67, 306
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	271, 356
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	78, 603
BseNI	ACTGG	2 cut(s)	67, 306
BseRI	GAGGAG	2 cut(s)	14, 450
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	4 cut(s)	5, 121, 740, 861
BsiHKAI	GWGCWC	2 cut(s)	337, 601
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	261, 666
BslI	CCNNNNNNNGG	2 cut(s)	271, 356
BsmFI	GGGAC	2 cut(s)	261, 666
BsnI	GGCC	4 cut(s)	5, 121, 740, 861
Bsp1286I	GDGCHC	2 cut(s)	337, 601
Bsp1407I	TGTACA	1 cut(s)	754
Bsp143I	GATC	4 cut(s)	19, 214, 426, 479
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	4 cut(s)	5, 121, 740, 861
BspCNI	CTCAG	2 cut(s)	79, 604
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	4 cut(s)	276, 277, 654, 655
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	754
BsrI	ACTGG	2 cut(s)	67, 306
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	19, 214, 426, 479
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	187, 670
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	472, 629
BstDEI	CTNAG	4 cut(s)	87, 612, 623, 764
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	4 cut(s)	22, 217, 429, 482
BstMBI	GATC	4 cut(s)	19, 214, 426, 479
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
BstNSI	RCATGY	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	2 cut(s)	214, 479
BstYI	RGATCY	2 cut(s)	214, 479
BsuRI	GGCC	4 cut(s)	5, 121, 740, 861
BtgZI	GCGATG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	196, 675
Cac8I	GCNNGC	2 cut(s)	472, 629
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	6 cut(s)	160, 275, 304, 379, 653, 739
Csp6I	GTAC	4 cut(s)	70, 565, 666, 755
CviAII	CATG	5 cut(s)	53, 230, 308, 518, 568
CviQI	GTAC	4 cut(s)	70, 565, 666, 755
DdeI	CTNAG	4 cut(s)	87, 612, 623, 764
DpnI	GATC	4 cut(s)	21, 216, 428, 481
DpnII	GATC	4 cut(s)	19, 214, 426, 479
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	121
Eco47I	GGWCC	5 cut(s)	160, 275, 304, 379, 653
EcoO109I	RGGNCCY	3 cut(s)	275, 653, 739
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	5 cut(s)	56, 233, 311, 521, 571
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	2 cut(s)	261, 666
FatI	CATG	5 cut(s)	52, 229, 307, 517, 567
Fnu4HI	GCNGC	2 cut(s)	6, 345
Fsp4HI	GCNGC	2 cut(s)	6, 345
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	6, 345
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	4 cut(s)	5, 121, 740, 861
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	5 cut(s)	56, 233, 311, 521, 571
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	523, 618
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	599, 842
Hpy188III	TCNNGA	4 cut(s)	17, 179, 230, 527
Hpy8I	GTNNAC	2 cut(s)	599, 842
HpyCH4III	ACNGT	2 cut(s)	187, 670
HpyCH4IV	ACGT	2 cut(s)	72, 682
HpyCH4V	TGCA	9 cut(s)	269, 371, 470, 503, 578, 599, 649, 678, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
HpyF3I	CTNAG	4 cut(s)	87, 612, 623, 764
HpySE526I	ACGT	2 cut(s)	72, 682
Hsp92II	CATG	5 cut(s)	56, 233, 311, 521, 571
HspAI	GCGC	1 cut(s)	253
KflI	GGGWCCC	2 cut(s)	275, 653
Kzo9I	GATC	4 cut(s)	19, 214, 426, 479
LmnI	GCTCC	3 cut(s)	250, 332, 352
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	223, 358
MaeII	ACGT	2 cut(s)	72, 682
MalI	GATC	4 cut(s)	21, 216, 428, 481
MboI	GATC	4 cut(s)	19, 214, 426, 479
MboII	GAAGA	2 cut(s)	224, 833
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	2 cut(s)	214, 479
MhlI	GDGCHC	2 cut(s)	337, 601
MluCI	AATT	5 cut(s)	38, 97, 281, 372, 415
MlyI	GAGTC	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
NdeII	GATC	4 cut(s)	19, 214, 426, 479
NlaIII	CATG	5 cut(s)	56, 233, 311, 521, 571
NlaIV	GGNNCC	4 cut(s)	276, 277, 654, 655
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	523
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	7, 346
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PpuMI	RGGWCCY	2 cut(s)	275, 653
Psp5II	RGGWCCY	2 cut(s)	275, 653
PspN4I	GGNNCC	4 cut(s)	276, 277, 654, 655
PspPI	GGNCC	6 cut(s)	160, 275, 304, 379, 653, 739
PspPPI	RGGWCCY	2 cut(s)	275, 653
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	214, 479
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	71, 566, 667, 756
RsaNI	GTAC	4 cut(s)	70, 565, 666, 755
RseI	CAYNNNNRTG	1 cut(s)	725
SatI	GCNGC	2 cut(s)	6, 345
Sau3AI	GATC	4 cut(s)	19, 214, 426, 479
Sau96I	GGNCC	6 cut(s)	160, 275, 304, 379, 653, 739
SchI	GAGTC	1 cut(s)	627
SduI	GDGCHC	2 cut(s)	337, 601
SetI	ASST	9 cut(s)	75, 93, 165, 328, 349, 367, 384, 643, 685
SfaNI	GCATC	2 cut(s)	223, 358
SinI	GGWCC	5 cut(s)	160, 275, 304, 379, 653
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	2 cut(s)	26, 338
SmoI	CTYRAG	2 cut(s)	26, 338
Sse9I	AATT	5 cut(s)	38, 97, 281, 372, 415
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	187, 670
TaiI	ACGT	2 cut(s)	75, 685
TaqI	TCGA	2 cut(s)	18, 429
TasI	AATT	5 cut(s)	38, 97, 281, 372, 415
TatI	WGTACW	2 cut(s)	665, 754
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	523
TscAI	CASTG	2 cut(s)	196, 675
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	218, 834
TspRI	CASTG	2 cut(s)	196, 675
Tth111I	GACNNNGTC	1 cut(s)	185
VneI	GTGCAC	1 cut(s)	597
VpaK11BI	GGWCC	5 cut(s)	160, 275, 304, 379, 653
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.