Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005177.1

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

70236 .. 71689

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005177.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgttggcggcaaacccacccaaatgccccttcttcctcactcactccctccccctctcctcctctccctctccgtccttcaaaatcacctgctctgctgcggcggaggagaggagcgagattcggctgggactgcccagcaaaggccgcatggccgccgacactctcgatctcctcaaggactgccaattgtccgtcaagcacgtcaatcctcgccagtacgttgctaaaatccctgagctgtctaatttggaagtgtggtttcaaaggcctaaggacattgtgaggaagttgctgtctggggatttggaccttggcattgccggtcttgacaccgtcagtgaatatggacaggggagtgaagatcttatcattgttcatgatgctcttggttttggggagtgccacttatcccttgcaataccaaaatatgggatttttgagaacattaattcactgaatgagctagcacaaatgcctcaatggactagagagaaacctctgcgagttgctactggcttcacctatttgggtcccaaatttgtgaaagaaaatggactggaccatgtgagtttttccacagctgatggagcacttgaggcagctcctgcggtaagaatatggttttgttgggatttgataccaggagcatcattctttgcccttctatgtggttgtattgctcagttaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

231

Amino Acids

25.27

Weight (kDa)

5.74

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	6 cut(s)	8, 101, 104, 148, 156, 611
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	143, 431
AgsI	TTSAA	2 cut(s)	82, 266
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	4 cut(s)	241, 466, 584, 605
AluI	AGCT	4 cut(s)	241, 466, 584, 605
Alw21I	GWGCWC	1 cut(s)	595
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	3 cut(s)	145, 153, 269
ApeKI	GCWGC	2 cut(s)	98, 602
ApoI	RAATTY	1 cut(s)	539
AseI	ATTAAT	1 cut(s)	450
AspS9I	GGNCC	3 cut(s)	310, 533, 562
AsuHPI	GGTGA	2 cut(s)	79, 514
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	3 cut(s)	310, 533, 562
AxyI	CCTNAGG	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	2 cut(s)	85, 614
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	645
BfaI	CTAG	2 cut(s)	467, 489
BfuAI	ACCTGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
BlsI	GCNGC	6 cut(s)	10, 100, 103, 149, 157, 604
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	3 cut(s)	310, 533, 562
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	3 cut(s)	310, 533, 562
BmiI	GGNNCC	2 cut(s)	534, 535
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	2 cut(s)	373, 659
BmtI	GCTAGC	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	161, 617
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 431
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	217, 520, 564
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	143, 431
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	3 cut(s)	217, 520, 564
BseRI	GAGGAG	5 cut(s)	49, 52, 122, 127, 164
BseXI	GCAGC	2 cut(s)	85, 614
BseYI	CCCAGC	2 cut(s)	127, 137
BshFI	GGCC	3 cut(s)	147, 155, 271
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	144, 519
BslI	CCNNNNNNNGG	2 cut(s)	143, 431
BsmFI	GGGAC	2 cut(s)	144, 519
BsnI	GGCC	3 cut(s)	147, 155, 271
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	2 cut(s)	169, 364
BspACI	CCGC	6 cut(s)	8, 101, 104, 148, 156, 611
BspANI	GGCC	3 cut(s)	147, 155, 271
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	534, 535
BspMI	ACCTGC	1 cut(s)	98
BspOI	GCTAGC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	217, 520, 564
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	169, 364
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	237, 273, 684
BstKTI	GATC	2 cut(s)	172, 367
BstMBI	GATC	2 cut(s)	169, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 147, 590, 599, 608
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	85, 614
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	147, 155, 271
BtrI	CACGTC	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	346, 455
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	310, 533, 562
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	151, 380, 566, 693
CviJI	RGCY	9 cut(s)	127, 147, 155, 241, 271, 466, 519, 584, 605
CviKI_1	RGCY	9 cut(s)	127, 147, 155, 241, 271, 466, 519, 584, 605
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	237, 273, 684
DpnI	GATC	2 cut(s)	171, 366
DpnII	GATC	2 cut(s)	169, 364
EaeI	YGGCCR	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	271
Eco47I	GGWCC	3 cut(s)	310, 533, 562
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	4 cut(s)	154, 383, 569, 696
FaiI	YATR	8 cut(s)	152, 348, 381, 432, 567, 622, 670, 694
FaqI	GGGAC	2 cut(s)	144, 519
FatI	CATG	4 cut(s)	150, 379, 565, 692
Fnu4HI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
Fsp4HI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
FspBI	CTAG	2 cut(s)	467, 489
GluI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
GsaI	CCCAGC	2 cut(s)	131, 141
HaeIII	GGCC	3 cut(s)	147, 155, 271
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	4 cut(s)	154, 383, 569, 696
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HinfI	GANTC	1 cut(s)	121
HpaI	GTTAAC	1 cut(s)	690
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	79, 514
Hpy166II	GTNNAC	1 cut(s)	690
Hpy188III	TCNNGA	3 cut(s)	167, 329, 380
Hpy8I	GTNNAC	1 cut(s)	690
HpyAV	CCTTC	3 cut(s)	40, 88, 674
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	204, 222
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 147, 590, 599, 608
HpyF3I	CTNAG	3 cut(s)	237, 273, 684
HpySE526I	ACGT	2 cut(s)	204, 222
Hsp92II	CATG	4 cut(s)	154, 383, 569, 696
KflI	GGGWCCC	1 cut(s)	533
KspAI	GTTAAC	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	169, 364
LmnI	GCTCC	4 cut(s)	114, 590, 610, 647
Lsp1109I	GCAGC	2 cut(s)	85, 614
LweI	GCATC	2 cut(s)	373, 659
MaeI	CTAG	2 cut(s)	467, 489
MaeII	ACGT	2 cut(s)	204, 222
MalI	GATC	2 cut(s)	171, 366
MboI	GATC	2 cut(s)	169, 364
MboII	GAAGA	2 cut(s)	25, 374
MfeI	CAATTG	1 cut(s)	188
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	4 cut(s)	188, 247, 451, 539
MseI	TTAA	2 cut(s)	450, 689
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	5 cut(s)	133, 147, 590, 599, 608
NdeII	GATC	2 cut(s)	169, 364
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	154, 383, 569, 696
NlaIV	GGNNCC	2 cut(s)	534, 535
PagI	TCATGA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	10, 100, 103, 149, 157, 604
PpuMI	RGGWCCY	1 cut(s)	533
PshBI	ATTAAT	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	643
PspFI	CCCAGC	2 cut(s)	127, 137
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	534, 535
PspPI	GGNCC	3 cut(s)	310, 533, 562
PspPPI	RGGWCCY	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	450, 689
SatI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
Sau3AI	GATC	2 cut(s)	169, 364
Sau96I	GGNCC	3 cut(s)	310, 533, 562
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	1 cut(s)	595
SfaNI	GCATC	2 cut(s)	373, 659
SinI	GGWCC	3 cut(s)	310, 533, 562
SmiMI	CAYNNNNRTG	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	176, 596
SmoI	CTYRAG	2 cut(s)	176, 596
Sse9I	AATT	4 cut(s)	188, 247, 451, 539
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	6 cut(s)	8, 101, 104, 148, 156, 611
SspMI	CTAG	2 cut(s)	467, 489
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	207, 225
TaqI	TCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	188, 247, 451, 539
TauI	GCSGC	4 cut(s)	11, 104, 150, 158
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	450, 689
Tru9I	TTAA	2 cut(s)	450, 689
TscAI	CASTG	2 cut(s)	346, 462
TseI	GCWGC	2 cut(s)	98, 602
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	2 cut(s)	63, 184
TspRI	CASTG	2 cut(s)	346, 462
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	3 cut(s)	310, 533, 562
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	1 cut(s)	539
XspI	CTAG	2 cut(s)	467, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.