Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

9049214 .. 9050982

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACATTTGAAAGAATTATTACATGTCTATTTAGGCTAGTTGGGCACACACACAAAATTTCGCCCTGGGCATCAAAAAGCTCAGGACCGGCCCTGGCTCGATCTTCCACTCCTCACAGCCGCCGGCCTAGCTATCTGTCAATTGAAGCTTTTGATCCAATTCAAGTTCCCAAAAATGCTGGCGGCAAACCTACCACCAAAATGTCCCTGTTTCCCACTGCTCGCTCGGTTCCCATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCGTCTGGGGCTGCCCGGCAAAGGCCGCATCGACGGTGACACTCGCAATTTCCTCAACAATTGTGAATTACCTGTTAAGCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGCTTCTTGTTGCAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTTTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGCAGTTCTTGTTGCTAGCAAGAGATCCTTGCTCGGAAGGAAAAATTCACTAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

325

Amino Acids

35.58

Weight (kDa)

8.83

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	152 - 322	1.2e-29	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	594
AccII	CGCG	1 cut(s)	941
AciI	CCGC	5 cut(s)	121, 183, 328, 472, 592
AclWI	GGATC	3 cut(s)	149, 295, 903
AcsI	RAATTY	5 cut(s)	57, 530, 637, 725, 928
AcvI	CACGTG	1 cut(s)	947
AfaI	GTAC	1 cut(s)	835
AfiI	CCNNNNNNNGG	3 cut(s)	323, 617, 800
AflIII	ACRYGT	2 cut(s)	23, 944
AgsI	TTSAA	6 cut(s)	11, 146, 164, 440, 452, 748
AjnI	CCWGG	2 cut(s)	65, 93
AluBI	AGCT	7 cut(s)	81, 132, 149, 421, 770, 791, 809
AluI	AGCT	7 cut(s)	81, 132, 149, 421, 770, 791, 809
Alw21I	GWGCWC	1 cut(s)	781
AlwI	GGATC	3 cut(s)	149, 295, 903
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	3 cut(s)	90, 125, 325
ApeKI	GCWGC	3 cut(s)	275, 313, 788
ApoI	RAATTY	5 cut(s)	57, 530, 637, 725, 928
AspS9I	GGNCC	4 cut(s)	86, 91, 719, 823
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	256, 350, 700
AsuNHI	GCTAGC	1 cut(s)	899
AvaII	GGWCC	3 cut(s)	86, 719, 823
BaeGI	GKGCMC	1 cut(s)	48
BbrPI	CACGTG	1 cut(s)	947
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	3 cut(s)	262, 300, 800
BccI	CCATC	2 cut(s)	767, 793
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BciT130I	CCWGG	2 cut(s)	67, 95
BcnI	CCSGG	1 cut(s)	318
BfaI	CTAG	4 cut(s)	38, 129, 900, 935
BfmI	CTRYAG	1 cut(s)	459
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	7 cut(s)	121, 184, 276, 314, 328, 592, 789
BlsI	GCNGC	7 cut(s)	122, 185, 277, 315, 329, 593, 790
BmcAI	AGTACT	1 cut(s)	835
Bme1390I	CCNGG	3 cut(s)	67, 95, 318
Bme18I	GGWCC	3 cut(s)	86, 719, 823
BmgT120I	GGNCC	4 cut(s)	86, 91, 719, 823
BmiI	GGNNCC	2 cut(s)	231, 720
BmrFI	CCNGG	3 cut(s)	67, 95, 318
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	5 cut(s)	80, 287, 339, 559, 958
BmtI	GCTAGC	1 cut(s)	903
BmuI	ACTGGG	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
Bpu10I	CCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	947
BsaJI	CCNNGG	4 cut(s)	65, 66, 93, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 617, 800
Bse118I	RCCGGY	2 cut(s)	88, 123
Bse1I	ACTGG	2 cut(s)	706, 841
BseBI	CCWGG	2 cut(s)	67, 95
BseDI	CCNNGG	4 cut(s)	65, 66, 93, 499
BseGI	GGATG	2 cut(s)	596, 973
BseLI	CCNNNNNNNGG	3 cut(s)	323, 617, 800
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	706, 841
BseRI	GAGGAG	2 cut(s)	102, 232
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	262, 300, 800
Bsh1236I	CGCG	1 cut(s)	941
BshFI	GGCC	3 cut(s)	92, 127, 327
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	3 cut(s)	89, 124, 318
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	3 cut(s)	323, 617, 800
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	92, 127, 327
Bsp1286I	GDGCHC	2 cut(s)	48, 781
Bsp143I	GATC	5 cut(s)	101, 154, 300, 550, 908
BspACI	CCGC	5 cut(s)	121, 183, 328, 472, 592
BspANI	GGCC	3 cut(s)	92, 127, 327
BspCNI	CTCAG	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	941
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	231, 720
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	3 cut(s)	149, 295, 903
BsrBI	CCGCTC	1 cut(s)	594
BsrFI	RCCGGY	2 cut(s)	88, 123
BsrI	ACTGG	2 cut(s)	706, 841
BssAI	RCCGGY	2 cut(s)	88, 123
BssECI	CCNNGG	4 cut(s)	65, 66, 93, 499
BssMI	GATC	5 cut(s)	101, 154, 300, 550, 908
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	67, 95
Bst4CI	ACNGT	3 cut(s)	338, 523, 617
Bst6I	CTCTTC	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	4 cut(s)	125, 181, 223, 901
BstDEI	CTNAG	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	596, 973
BstFNI	CGCG	1 cut(s)	941
BstKTI	GATC	5 cut(s)	104, 157, 303, 553, 911
BstMBI	GATC	5 cut(s)	101, 154, 300, 550, 908
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 129, 327, 478, 776, 785, 794
BstNI	CCWGG	2 cut(s)	67, 95
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	3 cut(s)	65, 93, 316
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	48
BstUI	CGCG	1 cut(s)	941
BstV1I	GCAGC	3 cut(s)	262, 300, 800
BstX2I	RGATCY	3 cut(s)	300, 550, 908
BstYI	RGATCY	3 cut(s)	300, 550, 908
BsuRI	GGCC	3 cut(s)	92, 127, 327
BtgZI	GCGATG	1 cut(s)	812
BtsCI	GGATG	2 cut(s)	596, 973
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	4 cut(s)	125, 181, 223, 901
CaiI	CAGNNNCTG	1 cut(s)	794
CciI	TCATGA	1 cut(s)	565
Cfr10I	RCCGGY	2 cut(s)	88, 123
Cfr13I	GGNCC	4 cut(s)	86, 91, 719, 823
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	1 cut(s)	834
CviAII	CATG	5 cut(s)	24, 235, 282, 566, 752
CviQI	GTAC	1 cut(s)	834
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	5 cut(s)	103, 156, 302, 552, 910
DpnII	GATC	5 cut(s)	101, 154, 300, 550, 908
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	499
Eco47I	GGWCC	3 cut(s)	86, 719, 823
Eco72I	CACGTG	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	2 cut(s)	65, 93
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	5 cut(s)	27, 238, 285, 569, 755
FalI	AAGNNNNNCTT	2 cut(s)	896, 928
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	5 cut(s)	23, 234, 281, 565, 751
Fnu4HI	GCNGC	7 cut(s)	121, 184, 276, 314, 328, 592, 789
FokI	GGATG	1 cut(s)	583
Fsp4HI	GCNGC	7 cut(s)	121, 184, 276, 314, 328, 592, 789
FspBI	CTAG	4 cut(s)	38, 129, 900, 935
GluI	GCNGC	7 cut(s)	121, 184, 276, 314, 328, 592, 789
HaeIII	GGCC	3 cut(s)	92, 127, 327
HapII	CCGG	3 cut(s)	89, 124, 318
HgaI	GACGC	1 cut(s)	947
Hin1II	CATG	5 cut(s)	27, 238, 285, 569, 755
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	1 cut(s)	952
HpaII	CCGG	3 cut(s)	89, 124, 318
HphI	GGTGA	3 cut(s)	256, 350, 700
Hpy188I	TCNGA	2 cut(s)	289, 920
Hpy188III	TCNNGA	4 cut(s)	84, 566, 644, 956
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	915
HpyCH4III	ACNGT	3 cut(s)	338, 523, 617
HpyCH4IV	ACGT	2 cut(s)	253, 946
HpyCH4V	TGCA	4 cut(s)	278, 431, 605, 971
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 129, 327, 478, 776, 785, 794
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	2 cut(s)	253, 946
Hsp92II	CATG	5 cut(s)	27, 238, 285, 569, 755
KroI	GCCGGC	1 cut(s)	123
KroNI	GCCGGC	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	101, 154, 300, 550, 908
LmnI	GCTCC	2 cut(s)	776, 796
Lsp1109I	GCAGC	3 cut(s)	262, 300, 800
LweI	GCATC	5 cut(s)	80, 287, 339, 559, 958
MaeI	CTAG	4 cut(s)	38, 129, 900, 935
MaeII	ACGT	2 cut(s)	253, 946
MaeIII	GTNAC	2 cut(s)	249, 338
MalI	GATC	5 cut(s)	103, 156, 302, 552, 910
MbiI	CCGCTC	1 cut(s)	594
MboI	GATC	5 cut(s)	101, 154, 300, 550, 908
MboII	GAAGA	3 cut(s)	96, 237, 560
MfeI	CAATTG	2 cut(s)	141, 361
MflI	RGATCY	3 cut(s)	300, 550, 908
MhlI	GDGCHC	2 cut(s)	48, 781
MmeI	TCCRAC	2 cut(s)	267, 945
MnlI	CCTC	9 cut(s)	123, 250, 253, 365, 402, 675, 778, 834, 857
MroNI	GCCGGC	1 cut(s)	123
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	3 cut(s)	89, 124, 318
MspR9I	CCNGG	3 cut(s)	67, 95, 318
MunI	CAATTG	2 cut(s)	141, 361
MvaI	CCWGG	2 cut(s)	67, 95
MvnI	CGCG	1 cut(s)	941
MwoI	GCNNNNNNNGC	7 cut(s)	43, 129, 327, 478, 776, 785, 794
NaeI	GCCGGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	5 cut(s)	101, 154, 300, 550, 908
NgoMIV	GCCGGC	1 cut(s)	123
NheI	GCTAGC	1 cut(s)	899
NlaIII	CATG	5 cut(s)	27, 238, 285, 569, 755
NlaIV	GGNNCC	2 cut(s)	231, 720
NmuCI	GTSAC	2 cut(s)	249, 338
NspI	RCATGY	1 cut(s)	27
PagI	TCATGA	1 cut(s)	565
PasI	CCCWGGG	1 cut(s)	66
PciI	ACATGT	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	952
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	7 cut(s)	122, 185, 277, 315, 329, 593, 790
PmaCI	CACGTG	1 cut(s)	947
PmlI	CACGTG	1 cut(s)	947
Ppu21I	YACGTR	1 cut(s)	947
PpuMI	RGGWCCY	1 cut(s)	719
PscI	ACATGT	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	2 cut(s)	65, 93
PspCI	CACGTG	1 cut(s)	947
PspGI	CCWGG	2 cut(s)	65, 93
PspN4I	GGNNCC	2 cut(s)	231, 720
PspPI	GGNCC	4 cut(s)	86, 91, 719, 823
PspPPI	RGGWCCY	1 cut(s)	719
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	3 cut(s)	300, 550, 908
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	7 cut(s)	121, 184, 276, 314, 328, 592, 789
Sau3AI	GATC	5 cut(s)	101, 154, 300, 550, 908
Sau96I	GGNCC	4 cut(s)	86, 91, 719, 823
ScaI	AGTACT	1 cut(s)	835
ScrFI	CCNGG	3 cut(s)	67, 95, 318
SduI	GDGCHC	2 cut(s)	48, 781
SfaNI	GCATC	5 cut(s)	80, 287, 339, 559, 958
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	3 cut(s)	86, 719, 823
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SsiI	CCGC	5 cut(s)	121, 183, 328, 472, 592
SspMI	CTAG	4 cut(s)	38, 129, 900, 935
StyD4I	CCNGG	3 cut(s)	65, 93, 316
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	3 cut(s)	338, 523, 617
TaiI	ACGT	2 cut(s)	256, 949
TaqI	TCGA	3 cut(s)	100, 333, 957
TatI	WGTACW	1 cut(s)	833
TauI	GCSGC	4 cut(s)	123, 186, 330, 594
TfiI	GAWTC	1 cut(s)	952
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	249, 338
TseI	GCWGC	3 cut(s)	275, 313, 788
Tsp45I	GTSAC	2 cut(s)	249, 338
TspDTI	ATGAA	3 cut(s)	554, 561, 746
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	3 cut(s)	86, 719, 823
XapI	RAATTY	5 cut(s)	57, 530, 637, 725, 928
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	4 cut(s)	38, 129, 900, 935
ZrmI	AGTACT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.