Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

13473828 .. 13475395

Gene Structure 1568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCCCTGTTTCCCACTGCTCGCTCGGTTCCCATGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTCTGCTGCATCATGGTCGGAAAGGAACGAGATCCGTCTGGGGCCGCCCGGCAAAGGCCGCATCGATGGTGACACTCGCAATTTCCTCAACAATTGTGAATTACCTGTTAAGCAAGACAATCCTCGTCAATATGTTGCTCAAATCCCACAGGTGCATATATCGTTCATACAAACTCTCTCATTCGATCGATCACTATCATCAATAAACAACTTTCTTATGCAGCTTCTTGTTGCAGTTATTGAAGTGTGTTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTTTGTGAATTTGGACAGGGGAATGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCGCTCATCCCTTGCAATACCAAACTGTGGGATTTTTGAGAATATAAATTCTCTGGACGAGTTAGCACAAATGCCTCAATGGACTAAAGAGAAACCTTTGCGTTTTATTACTGGCTTCACCTATTTGGGTCCTAAATTTATGAAAGAAAATGGATTGAACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTGTGTTGAGAAGTCAGGCAGTTCTTGTTGCTAGCAAGAGATCCTTGCTCGGAAGGAAAAATTCACTAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

282

Amino Acids

31.0

Weight (kDa)

5.99

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	109 - 279	8.4e-30	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	465
AccII	CGCG	1 cut(s)	812
AciI	CCGC	4 cut(s)	113, 127, 343, 463
AclWI	GGATC	2 cut(s)	94, 774
AcsI	RAATTY	4 cut(s)	401, 508, 596, 799
AcvI	CACGTG	1 cut(s)	818
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	3 cut(s)	122, 488, 671
AflIII	ACRYGT	1 cut(s)	815
AgsI	TTSAA	3 cut(s)	311, 323, 619
AluBI	AGCT	4 cut(s)	292, 641, 662, 680
AluI	AGCT	4 cut(s)	292, 641, 662, 680
Alw21I	GWGCWC	1 cut(s)	652
AlwI	GGATC	2 cut(s)	94, 774
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	110, 124
ApeKI	GCWGC	3 cut(s)	74, 289, 659
ApoI	RAATTY	4 cut(s)	401, 508, 596, 799
AspS9I	GGNCC	3 cut(s)	110, 590, 694
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	55, 149, 571
AsuNHI	GCTAGC	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	590, 694
BbrPI	CACGTG	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	3 cut(s)	61, 301, 671
BccI	CCATC	3 cut(s)	128, 638, 664
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcnI	CCSGG	1 cut(s)	117
BfaI	CTAG	2 cut(s)	771, 806
BfmI	CTRYAG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
BlsI	GCNGC	6 cut(s)	76, 114, 128, 291, 464, 661
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	590, 694
BmgT120I	GGNCC	3 cut(s)	110, 590, 694
BmiI	GGNNCC	3 cut(s)	30, 111, 591
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	4 cut(s)	86, 138, 430, 829
BmtI	GCTAGC	1 cut(s)	774
BmuI	ACTGGG	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	117
Bsa29I	ATCGAT	2 cut(s)	132, 256
BsaAI	YACGTR	1 cut(s)	818
BsaBI	GATNNNNATC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 488, 671
Bse1I	ACTGG	2 cut(s)	577, 712
Bse8I	GATNNNNATC	1 cut(s)	262
BseCI	ATCGAT	2 cut(s)	132, 256
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	467, 844
BseJI	GATNNNNATC	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	122, 488, 671
BseNI	ACTGG	2 cut(s)	577, 712
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	61, 301, 671
Bsh1236I	CGCG	1 cut(s)	812
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	112, 126
BshVI	ATCGAT	2 cut(s)	132, 256
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	3 cut(s)	122, 488, 671
BsnI	GGCC	2 cut(s)	112, 126
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	5 cut(s)	99, 253, 257, 421, 779
BspACI	CCGC	4 cut(s)	113, 127, 343, 463
BspANI	GGCC	2 cut(s)	112, 126
BspDI	ATCGAT	2 cut(s)	132, 256
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	30, 111, 591
BspOI	GCTAGC	1 cut(s)	774
BspPI	GGATC	2 cut(s)	94, 774
BsrBI	CCGCTC	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	577, 712
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	5 cut(s)	99, 253, 257, 421, 779
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	394, 488
Bst6I	CTCTTC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	22, 772
BstF5I	GGATG	2 cut(s)	467, 844
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	5 cut(s)	102, 256, 260, 424, 782
BstMBI	GATC	5 cut(s)	99, 253, 257, 421, 779
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 349, 647, 656, 665
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	3 cut(s)	61, 301, 671
BstX2I	RGATCY	3 cut(s)	99, 421, 779
BstYI	RGATCY	3 cut(s)	99, 421, 779
Bsu15I	ATCGAT	2 cut(s)	132, 256
BsuRI	GGCC	2 cut(s)	112, 126
BsuTUI	ATCGAT	2 cut(s)	132, 256
BtgZI	GCGATG	1 cut(s)	683
BtsCI	GGATG	2 cut(s)	467, 844
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	22, 772
CaiI	CAGNNNCTG	1 cut(s)	665
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	110, 590, 694
ClaI	ATCGAT	2 cut(s)	132, 256
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	4 cut(s)	34, 81, 437, 623
CviJI	RGCY	7 cut(s)	112, 126, 292, 576, 641, 662, 680
CviKI_1	RGCY	7 cut(s)	112, 126, 292, 576, 641, 662, 680
CviQI	GTAC	1 cut(s)	705
DpnI	GATC	5 cut(s)	101, 255, 259, 423, 781
DpnII	GATC	5 cut(s)	99, 253, 257, 421, 779
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	590, 694
Eco72I	CACGTG	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	37, 84, 440, 626
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	4 cut(s)	33, 80, 436, 622
Fnu4HI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
FspBI	CTAG	2 cut(s)	771, 806
GluI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
HaeIII	GGCC	2 cut(s)	112, 126
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	818
Hin1II	CATG	4 cut(s)	37, 84, 440, 626
HinfI	GANTC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	3 cut(s)	55, 149, 571
Hpy188I	TCNGA	2 cut(s)	88, 791
Hpy188III	TCNNGA	3 cut(s)	437, 515, 827
HpyAV	CCTTC	1 cut(s)	786
HpyCH4III	ACNGT	2 cut(s)	394, 488
HpyCH4IV	ACGT	2 cut(s)	52, 817
HpyCH4V	TGCA	6 cut(s)	77, 223, 289, 302, 476, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 349, 647, 656, 665
HpySE526I	ACGT	2 cut(s)	52, 817
Hsp92II	CATG	4 cut(s)	37, 84, 440, 626
Kzo9I	GATC	5 cut(s)	99, 253, 257, 421, 779
LmnI	GCTCC	2 cut(s)	647, 667
Lsp1109I	GCAGC	3 cut(s)	61, 301, 671
LweI	GCATC	4 cut(s)	86, 138, 430, 829
MaeI	CTAG	2 cut(s)	771, 806
MaeII	ACGT	2 cut(s)	52, 817
MaeIII	GTNAC	2 cut(s)	48, 137
MalI	GATC	5 cut(s)	101, 255, 259, 423, 781
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	5 cut(s)	99, 253, 257, 421, 779
MboII	GAAGA	2 cut(s)	36, 431
MfeI	CAATTG	1 cut(s)	160
MflI	RGATCY	3 cut(s)	99, 421, 779
MhlI	GDGCHC	1 cut(s)	652
MluCI	AATT	9 cut(s)	148, 160, 167, 401, 508, 596, 738, 799, 844
MmeI	TCCRAC	2 cut(s)	66, 816
MnlI	CCTC	8 cut(s)	49, 52, 164, 201, 546, 649, 705, 728
MseI	TTAA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	5 cut(s)	126, 349, 647, 656, 665
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	99, 253, 257, 421, 779
NheI	GCTAGC	1 cut(s)	770
NlaIII	CATG	4 cut(s)	37, 84, 440, 626
NlaIV	GGNNCC	3 cut(s)	30, 111, 591
NmuCI	GTSAC	2 cut(s)	48, 137
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	823
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	6 cut(s)	76, 114, 128, 291, 464, 661
Ple19I	CGATCG	1 cut(s)	256
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
Ppu21I	YACGTR	1 cut(s)	818
PpuMI	RGGWCCY	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	590
PspCI	CACGTG	1 cut(s)	818
PspN4I	GGNNCC	3 cut(s)	30, 111, 591
PspPI	GGNCC	3 cut(s)	110, 590, 694
PspPPI	RGGWCCY	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	3 cut(s)	99, 421, 779
PvuI	CGATCG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	6 cut(s)	75, 113, 127, 290, 463, 660
Sau3AI	GATC	5 cut(s)	99, 253, 257, 421, 779
Sau96I	GGNCC	3 cut(s)	110, 590, 694
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	652
SfaNI	GCATC	4 cut(s)	86, 138, 430, 829
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	590, 694
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	9 cut(s)	148, 160, 167, 401, 508, 596, 738, 799, 844
SsiI	CCGC	4 cut(s)	113, 127, 343, 463
SspMI	CTAG	2 cut(s)	771, 806
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	394, 488
TaiI	ACGT	2 cut(s)	55, 820
TaqI	TCGA	4 cut(s)	132, 252, 256, 828
TasI	AATT	9 cut(s)	148, 160, 167, 401, 508, 596, 738, 799, 844
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	3 cut(s)	115, 129, 465
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	48, 137
TseI	GCWGC	3 cut(s)	74, 289, 659
Tsp45I	GTSAC	2 cut(s)	48, 137
TspDTI	ATGAA	4 cut(s)	223, 425, 432, 617
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	22
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	590, 694
XapI	RAATTY	4 cut(s)	401, 508, 596, 799
XspI	CTAG	2 cut(s)	771, 806
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.