Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

77267577 .. 77288668

Gene Structure 21092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG543500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTGTCCTCCTCTTCGTCACGTTTCCAAATCACCTGTTGTGCTGCATCGTGGTCGGAAAGGAACGAGATCCATCTGGGGCTGCCCAGCAAAGGCCGGATCGGCGGTGACACTCGCGATTTCCTCAACAACTACTGTTAAGCTAGACAATCATCGTCAATATGTTGCTCAAATCCCGCAGCTTCTTGTTGCAGTTATTGAAGTGTGGTTTCAAAGACCTACAGACATTGTGCGGAGATTGCTGTCTGGGGATTTAGACCTTGGCATAGTGGGTTTAGATACCGTCTGTGAATTTGGACAGGTATCTACTCTTGGGTATGAGGAGTGCCGCTTATCCCTTGCAATGGGGATAGCTGATGTGATTTTGGACCTTGTGAGTACTGGGAGGACACTAAAAGAAAACAAGGGAGGAATTACATTTGCAGTTCTTGTTGCTAGCAAGAGATCCTTTCTCCGAAGGAAAAATTCACTAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATCGAAAGGCAGAGGGTACATTCATGATAAGATCGAAGAGTAACAACCTACGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

188

Amino Acids

20.69

Weight (kDa)

10.02

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	114 - 167	7.3e-07	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	116, 476
AciI	CCGC	4 cut(s)	104, 176, 232, 328
AclWI	GGATC	3 cut(s)	63, 106, 438
AcsI	RAATTY	2 cut(s)	290, 463
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	2 cut(s)	379, 526
AfiI	CCNNNNNNNGG	2 cut(s)	91, 343
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	2 cut(s)	200, 212
AluBI	AGCT	3 cut(s)	142, 181, 353
AluI	AGCT	3 cut(s)	142, 181, 353
AlwI	GGATC	3 cut(s)	63, 106, 438
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	43, 81, 178
ApoI	RAATTY	2 cut(s)	290, 463
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	24, 118
AsuNHI	GCTAGC	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	367
BbrPI	CACGTG	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	30, 68, 190
BccI	CCATC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BfaI	CTAG	3 cut(s)	143, 435, 470
BfmI	CTRYAG	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	4 cut(s)	44, 82, 179, 328
BlsI	GCNGC	4 cut(s)	45, 83, 180, 329
BmcAI	AGTACT	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	55, 493
BmtI	GCTAGC	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	390
BsaAI	YACGTR	2 cut(s)	482, 560
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 343
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	91, 343
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	30, 68, 190
BseYI	CCCAGC	1 cut(s)	85
Bsh1236I	CGCG	2 cut(s)	116, 476
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	91, 343
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	68, 98, 443, 539
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	4 cut(s)	104, 176, 232, 328
BspANI	GGCC	1 cut(s)	95
BspFNI	CGCG	2 cut(s)	116, 476
BspHI	TCATGA	1 cut(s)	531
BspOI	GCTAGC	1 cut(s)	438
BspPI	GGATC	3 cut(s)	63, 106, 438
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	4 cut(s)	68, 98, 443, 539
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	136, 283
Bst6I	CTCTTC	2 cut(s)	18, 539
BstBAI	YACGTR	2 cut(s)	482, 560
BstC8I	GCNNGC	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	2 cut(s)	116, 476
BstKTI	GATC	4 cut(s)	71, 101, 446, 542
BstMBI	GATC	4 cut(s)	68, 98, 443, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 238
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	2 cut(s)	116, 476
BstV1I	GCAGC	3 cut(s)	30, 68, 190
BstX2I	RGATCY	2 cut(s)	68, 443
BstYI	RGATCY	2 cut(s)	68, 443
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	508
BtuMI	TCGCGA	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	436
CciI	TCATGA	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	367
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	378, 525
CviAII	CATG	2 cut(s)	532, 564
CviJI	RGCY	5 cut(s)	81, 95, 142, 181, 353
CviKI_1	RGCY	5 cut(s)	81, 95, 142, 181, 353
CviQI	GTAC	2 cut(s)	378, 525
DpnI	GATC	4 cut(s)	70, 100, 445, 541
DpnII	GATC	4 cut(s)	68, 98, 443, 539
Eam1104I	CTCTTC	2 cut(s)	18, 539
EarI	CTCTTC	2 cut(s)	18, 539
Eco130I	CCWWGG	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	535, 567
FaiI	YATR	5 cut(s)	162, 266, 318, 533, 565
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	2 cut(s)	531, 563
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	44, 82, 179, 328
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	4 cut(s)	44, 82, 179, 328
FspBI	CTAG	3 cut(s)	143, 435, 470
GluI	GCNGC	4 cut(s)	44, 82, 179, 328
GsaI	CCCAGC	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	535, 567
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	2 cut(s)	24, 118
Hpy188I	TCNGA	2 cut(s)	57, 455
Hpy188III	TCNNGA	3 cut(s)	115, 491, 532
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	2 cut(s)	136, 283
HpyCH4IV	ACGT	3 cut(s)	21, 481, 559
HpyCH4V	TGCA	6 cut(s)	46, 191, 341, 422, 506, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 238
HpySE526I	ACGT	3 cut(s)	21, 481, 559
Hsp92II	CATG	2 cut(s)	535, 567
Kzo9I	GATC	4 cut(s)	68, 98, 443, 539
LpnPI	CCDG	7 cut(s)	48, 61, 99, 109, 231, 284, 366
Lsp1109I	GCAGC	3 cut(s)	30, 68, 190
LweI	GCATC	2 cut(s)	55, 493
MaeI	CTAG	3 cut(s)	143, 435, 470
MaeII	ACGT	3 cut(s)	21, 481, 559
MaeIII	GTNAC	3 cut(s)	17, 106, 548
MalI	GATC	4 cut(s)	70, 100, 445, 541
MboI	GATC	4 cut(s)	68, 98, 443, 539
MboII	GAAGA	2 cut(s)	5, 556
MflI	RGATCY	2 cut(s)	68, 443
MluCI	AATT	3 cut(s)	290, 411, 463
MmeI	TCCRAC	2 cut(s)	35, 480
MnlI	CCTC	7 cut(s)	18, 21, 133, 313, 378, 401, 514
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	96
MvnI	CGCG	2 cut(s)	116, 476
MwoI	GCNNNNNNNGC	2 cut(s)	101, 238
NdeII	GATC	4 cut(s)	68, 98, 443, 539
NheI	GCTAGC	1 cut(s)	434
NlaIII	CATG	2 cut(s)	535, 567
NmuCI	GTSAC	2 cut(s)	17, 106
NruI	TCGCGA	1 cut(s)	116
PagI	TCATGA	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	4 cut(s)	45, 83, 180, 329
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
Ppu21I	YACGTR	2 cut(s)	482, 560
PspCI	CACGTG	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	68, 443
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	2 cut(s)	379, 526
RsaNI	GTAC	2 cut(s)	378, 525
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	4 cut(s)	44, 82, 179, 328
Sau3AI	GATC	4 cut(s)	68, 98, 443, 539
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	379
SfaNI	GCATC	2 cut(s)	55, 493
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	367
Sse9I	AATT	3 cut(s)	290, 411, 463
SsiI	CCGC	4 cut(s)	104, 176, 232, 328
SspMI	CTAG	3 cut(s)	143, 435, 470
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	136, 283
TaiI	ACGT	3 cut(s)	24, 484, 562
TaqI	TCGA	3 cut(s)	492, 511, 542
TasI	AATT	3 cut(s)	290, 411, 463
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	2 cut(s)	17, 106
TseI	GCWGC	3 cut(s)	43, 81, 178
Tsp45I	GTSAC	2 cut(s)	17, 106
TspDTI	ATGAA	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	290, 463
XspI	CTAG	3 cut(s)	143, 435, 470
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.