Rroxscaffold_160G00433870

ATP phosphoribosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
Physical Location & Seq
Forward (+)
363148 .. 367385
4238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433870.1

Sequence Viewer

Length: 1116 bp
ATGTTGGCGGCAAACCCACCCAAATGCTCCTTCTTTCTTACTCACTCCCTCCCCCTCCTCCTCTCCCTCGCCGTCACTGCCGTTCAAAATCACCTGTTCTGCGGCGGCGTCGGCGGAGGAGGAGAGGAGCAAGATTCGGCTGGGACTGCCCAGCAAAGGCCGCATGGCTGCCGACACTCTCGATCTCCTCAAGGACTGCCAGGTTTCCGTCAAGCACGTCAATCCTCACCACTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTTTTGACACCGTCACTGAATATGGACAGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAACTCACTGAATGAGCTAGCACAAATGCCTCAATGGACCAGAGAGAAACCTCTGCGAGTTTCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCAGTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGGCCTTGTGAGTAGTGGGATAACACTAAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACGTGAGATTCTTGAAAGATTGGAGGCACATCTAAAGGCAAAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTGTAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATCACCATATATGTGCCAGAAGAGACCCTCTACAAGTCTGTACAACAACTGAGAGCGATTGGAGGCAGTGGGGTTCTGTATTCCCCTTTGACTTTCATTTGTGATGAAGAAACTCCAAGATGGCGGGAACTTCTCTCTAAACTTGGCCTCTAA

Protein Analysis

371

Amino Acids

40.24

Weight (kDa)

6.72

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HisG PF01634 87 - 263 6.8e-35 ATP phosphoribosyltransferase
HisG_C PF08029 268 - 351 1.1e-10 HisG, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 422
AccI GTMKAC 1 cut(s) 815
AciI CCGC 6 cut(s) 8, 102, 105, 114, 161, 1087
AclWI GGATC 1 cut(s) 723
AcsI RAATTY 1 cut(s) 530
AcvI CACGTG 1 cut(s) 767
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 916, 1005
AfiI CCNNNNNNNGG 3 cut(s) 156, 422, 605
AflIII ACRYGT 1 cut(s) 764
AgsI TTSAA 5 cut(s) 86, 257, 670, 758, 779
AjiI CACGTC 1 cut(s) 218
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 5 cut(s) 457, 575, 596, 614, 890
AluI AGCT 5 cut(s) 457, 575, 596, 614, 890
Alw21I GWGCWC 2 cut(s) 754, 850
Alw26I GTCTC 1 cut(s) 980
Alw44I GTGCAC 2 cut(s) 750, 846
AlwI GGATC 1 cut(s) 723
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 4 cut(s) 158, 260, 628, 1108
ApaLI GTGCAC 2 cut(s) 750, 846
ApeKI GCWGC 2 cut(s) 168, 593
ApoI RAATTY 1 cut(s) 530
AspS9I GGNCC 6 cut(s) 301, 477, 524, 553, 628, 902
AsuHPI GGTGA 4 cut(s) 83, 219, 505, 958
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 5 cut(s) 301, 477, 524, 553, 902
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 2 cut(s) 754, 850
BbrPI CACGTG 1 cut(s) 767
Bbv12I GWGCWC 2 cut(s) 754, 850
BbvI GCAGC 2 cut(s) 155, 605
BccI CCATC 6 cut(s) 572, 598, 889, 929, 971, 1077
BceAI ACGGC 2 cut(s) 56, 65
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 980
BfaI CTAG 1 cut(s) 458
BglII AGATCT 1 cut(s) 355
BisI GCNGC 6 cut(s) 9, 103, 106, 161, 169, 594
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 6 cut(s) 10, 104, 107, 162, 170, 595
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 5 cut(s) 301, 477, 524, 553, 902
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 6 cut(s) 301, 477, 524, 553, 628, 902
BmiI GGNNCC 4 cut(s) 525, 526, 903, 904
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 364, 607
BmtI GCTAGC 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 872
Bpu1102I GCTNAGC 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 767
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 980
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 422, 605
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 511, 555
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 3 cut(s) 156, 422, 605
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 852, 1004
BseNI ACTGG 2 cut(s) 511, 555
BseRI GAGGAG 7 cut(s) 47, 50, 132, 135, 140, 177, 699
BseSI GKGCMC 2 cut(s) 754, 850
BseXI GCAGC 2 cut(s) 155, 605
BseYI CCCAGC 2 cut(s) 140, 150
BshFI GGCC 4 cut(s) 160, 262, 630, 1110
BsiHKAI GWGCWC 2 cut(s) 754, 850
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 3 cut(s) 157, 510, 915
BslI CCNNNNNNNGG 3 cut(s) 156, 422, 605
BsmAI GTCTC 1 cut(s) 980
BsmFI GGGAC 3 cut(s) 157, 510, 915
BsnI GGCC 4 cut(s) 160, 262, 630, 1110
Bso31I GGTCTC 1 cut(s) 980
Bsp1286I GDGCHC 2 cut(s) 754, 850
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 4 cut(s) 182, 355, 675, 728
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 6 cut(s) 8, 102, 105, 114, 161, 1087
BspANI GGCC 4 cut(s) 160, 262, 630, 1110
BspCNI CTCAG 2 cut(s) 853, 1005
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 4 cut(s) 525, 526, 903, 904
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 980
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 1003
BsrI ACTGG 2 cut(s) 511, 555
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 4 cut(s) 182, 355, 675, 728
BssNAI GTATAC 1 cut(s) 816
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 304
Bst1107I GTATAC 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 5 cut(s) 234, 328, 820, 910, 919
Bst6I CTCTTC 1 cut(s) 978
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 1003
BstBAI YACGTR 1 cut(s) 767
BstC8I GCNNGC 3 cut(s) 459, 721, 878
BstDEI CTNAG 4 cut(s) 264, 861, 872, 1013
BstKTI GATC 4 cut(s) 185, 358, 678, 731
BstMAI GTCTC 1 cut(s) 980
BstMBI GATC 4 cut(s) 182, 355, 675, 728
BstMWI GCNNNNNNNGC 7 cut(s) 77, 111, 146, 160, 581, 590, 599
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstSLI GKGCMC 2 cut(s) 754, 850
BstV1I GCAGC 2 cut(s) 155, 605
BstX2I RGATCY 2 cut(s) 355, 728
BstYI RGATCY 2 cut(s) 355, 728
BstZ17I GTATAC 1 cut(s) 816
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 4 cut(s) 160, 262, 630, 1110
BtgZI GCGATG 1 cut(s) 617
BtrI CACGTC 1 cut(s) 218
BtsI GCAGTG 2 cut(s) 75, 1036
BtsIMutI CAGTG 7 cut(s) 75, 230, 330, 446, 906, 924, 1036
Cac8I GCNNGC 3 cut(s) 459, 721, 878
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 6 cut(s) 301, 477, 524, 553, 628, 902
CseI GACGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 915, 1004
CviAII CATG 3 cut(s) 164, 371, 557
CviQI GTAC 2 cut(s) 915, 1004
DdeI CTNAG 4 cut(s) 264, 861, 872, 1013
DpnI GATC 4 cut(s) 184, 357, 677, 730
DpnII GATC 4 cut(s) 182, 355, 675, 728
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 304
Eco147I AGGCCT 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 980
Eco47I GGWCC 5 cut(s) 301, 477, 524, 553, 902
Eco72I CACGTG 1 cut(s) 767
Eco81I CCTNAGG 1 cut(s) 264
EcoO109I RGGNCCY 2 cut(s) 524, 902
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 167, 374, 560
FalI AAGNNNNNCTT 4 cut(s) 696, 728, 716, 748
FaqI GGGAC 3 cut(s) 157, 510, 915
FatI CATG 3 cut(s) 163, 370, 556
FauI CCCGC 1 cut(s) 1080
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 6 cut(s) 9, 103, 106, 161, 169, 594
Fsp4HI GCNGC 6 cut(s) 9, 103, 106, 161, 169, 594
FspBI CTAG 1 cut(s) 458
GluI GCNGC 6 cut(s) 9, 103, 106, 161, 169, 594
GsaI CCCAGC 2 cut(s) 144, 154
HaeIII GGCC 4 cut(s) 160, 262, 630, 1110
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 167, 374, 560
HinfI GANTC 3 cut(s) 134, 772, 867
HpaII CCGG 1 cut(s) 315
HphI GGTGA 4 cut(s) 83, 219, 505, 958
Hpy166II GTNNAC 3 cut(s) 752, 816, 848
Hpy188III TCNNGA 3 cut(s) 180, 371, 776
Hpy8I GTNNAC 3 cut(s) 752, 816, 848
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 5 cut(s) 234, 328, 820, 910, 919
HpyCH4IV ACGT 3 cut(s) 217, 766, 931
HpyCH4V TGCA 8 cut(s) 410, 620, 719, 752, 827, 848, 898, 927
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 111, 146, 160, 581, 590, 599
HpyF3I CTNAG 4 cut(s) 264, 861, 872, 1013
HpySE526I ACGT 3 cut(s) 217, 766, 931
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 167, 374, 560
KflI GGGWCCC 2 cut(s) 524, 902
Kzo9I GATC 4 cut(s) 182, 355, 675, 728
LmnI GCTCC 4 cut(s) 32, 127, 581, 601
Lsp1109I GCAGC 2 cut(s) 155, 605
LweI GCATC 2 cut(s) 364, 607
MaeI CTAG 1 cut(s) 458
MaeII ACGT 3 cut(s) 217, 766, 931
MaeIII GTNAC 2 cut(s) 73, 328
MalI GATC 4 cut(s) 184, 357, 677, 730
MboI GATC 4 cut(s) 182, 355, 675, 728
MboII GAAGA 3 cut(s) 365, 995, 1082
MflI RGATCY 2 cut(s) 355, 728
MhlI GDGCHC 2 cut(s) 754, 850
MluCI AATT 4 cut(s) 238, 530, 621, 664
MlyI GAGTC 1 cut(s) 876
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 2 cut(s) 22, 974
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 7 cut(s) 77, 111, 146, 160, 581, 590, 599
NdeII GATC 4 cut(s) 182, 355, 675, 728
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 3 cut(s) 167, 374, 560
NlaIV GGNNCC 4 cut(s) 525, 526, 903, 904
NmuCI GTSAC 2 cut(s) 73, 328
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 1 cut(s) 262
PfeI GAWTC 2 cut(s) 134, 772
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 6 cut(s) 10, 104, 107, 162, 170, 595
PleI GAGTC 1 cut(s) 875
PmaCI CACGTG 1 cut(s) 767
PmlI CACGTG 1 cut(s) 767
PpsI GAGTC 1 cut(s) 875
Ppu21I YACGTR 1 cut(s) 767
PpuMI RGGWCCY 2 cut(s) 524, 902
Psp5II RGGWCCY 2 cut(s) 524, 902
Psp6I CCWGG 1 cut(s) 199
PspCI CACGTG 1 cut(s) 767
PspFI CCCAGC 2 cut(s) 140, 150
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 4 cut(s) 525, 526, 903, 904
PspPI GGNCC 6 cut(s) 301, 477, 524, 553, 628, 902
PspPPI RGGWCCY 2 cut(s) 524, 902
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 355, 728
PsyI GACNNNGTC 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 916, 1005
RsaNI GTAC 2 cut(s) 915, 1004
RseI CAYNNNNRTG 2 cut(s) 22, 974
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 6 cut(s) 9, 103, 106, 161, 169, 594
Sau3AI GATC 4 cut(s) 182, 355, 675, 728
Sau96I GGNCC 6 cut(s) 301, 477, 524, 553, 628, 902
SchI GAGTC 1 cut(s) 876
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 2 cut(s) 754, 850
SfaNI GCATC 2 cut(s) 364, 607
SinI GGWCC 5 cut(s) 301, 477, 524, 553, 902
SmiMI CAYNNNNRTG 2 cut(s) 22, 974
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 4 cut(s) 238, 530, 621, 664
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 6 cut(s) 8, 102, 105, 114, 161, 1087
SspMI CTAG 1 cut(s) 458
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 5 cut(s) 234, 328, 820, 910, 919
TaiI ACGT 3 cut(s) 220, 769, 934
TaqI TCGA 2 cut(s) 181, 678
TasI AATT 4 cut(s) 238, 530, 621, 664
TatI WGTACW 2 cut(s) 914, 1003
TauI GCSGC 4 cut(s) 11, 105, 108, 163
TfiI GAWTC 2 cut(s) 134, 772
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 7 cut(s) 82, 237, 337, 453, 913, 924, 1036
TseFI GTSAC 2 cut(s) 73, 328
TseI GCWGC 2 cut(s) 168, 593
Tsp45I GTSAC 2 cut(s) 73, 328
TspDTI ATGAA 4 cut(s) 359, 758, 1048, 1083
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 7 cut(s) 82, 237, 337, 453, 913, 924, 1036
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 422
VneI GTGCAC 2 cut(s) 750, 846
VpaK11BI GGWCC 5 cut(s) 301, 477, 524, 553, 902
XapI RAATTY 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 815
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.